Variant report

Variant	rs398038151
Chromosome Location	chr19:52789447-52789448
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:52774375..52777116-chr19:52786827..52789950,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
2	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv833873	chr19:52788939-52937281	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52774200-52797400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:52774200-52799600	Weak transcription	Hela-S3	cervix
3	chr19:52774600-52795800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:52777200-52794000	Weak transcription	Psoas Muscle	Psoas
5	chr19:52780400-52800000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr19:52781600-52793600	Weak transcription	Fetal Heart	heart
7	chr19:52783200-52794800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr19:52783200-52795200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr19:52783400-52795800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:52784400-52794800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:52784600-52791600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:52784600-52792000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:52784600-52794000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:52784600-52794600	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr19:52784600-52795000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr19:52784600-52795800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr19:52784600-52796000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:52784600-52796400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:52784600-52796800	ZNF genes & repeats	Liver	Liver
20	chr19:52784800-52789800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:52784800-52790000	Strong transcription	Fetal Brain Female	brain
22	chr19:52784800-52790200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr19:52784800-52790800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:52784800-52793400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr19:52784800-52794800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr19:52784800-52795800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:52784800-52795800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:52784800-52795800	Strong transcription	Dnd41	blood
29	chr19:52785000-52793600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr19:52785000-52795400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
31	chr19:52785000-52795800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr19:52785000-52796000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr19:52785200-52789800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr19:52785200-52792000	Strong transcription	Fetal Lung	lung
35	chr19:52785200-52794600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:52785200-52794800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr19:52785200-52795400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr19:52785200-52796000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:52785200-52796400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:52785400-52790200	Strong transcription	Fetal Stomach	stomach
41	chr19:52785400-52794200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr19:52785400-52794400	ZNF genes & repeats	Lung	lung
43	chr19:52785400-52795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr19:52785400-52796000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr19:52785400-52796000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:52785400-52796400	Strong transcription	Adipose Nuclei	Adipose
47	chr19:52785400-52797400	Strong transcription	Brain Germinal Matrix	brain
48	chr19:52785600-52795800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr19:52785800-52793600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:52786000-52791200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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