Variant report

Variant	nsv834052
Chromosome Location	chr21:17967385-18142224
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr21:18127656-18127679	Hela-S3	cervix:	n/a	n/a
2	BRCA1	chr21:18087296-18087431	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr21:17977061-17977305	IMR90	lung:	n/a	n/a
4	CEBPB	chr21:17968627-17968922	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr21:18017010-18017389	Hela-S3	cervix:	n/a	chr21:18017181-18017192
6	CEBPB	chr21:18063497-18063626	HepG2	liver:	n/a	chr21:18063558-18063569
7	CEBPB	chr21:18139537-18139896	IMR90	lung:	n/a	chr21:18139714-18139725
8	CEBPB	chr21:18006815-18007108	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr21:18006071-18006366	H1-hESC	embryonic stem cell:	n/a	chr21:18006223-18006234 chr21:18006222-18006235 chr21:18006089-18006102 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233 chr21:18006222-18006233 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233
10	CEBPB	chr21:18139577-18139863	K562	blood:	n/a	chr21:18139714-18139725
11	CEBPB	chr21:18139549-18139894	Hela-S3	cervix:	n/a	chr21:18139714-18139725
12	CEBPB	chr21:18139551-18139898	HepG2	liver:	n/a	chr21:18139714-18139725
13	CEBPB	chr21:18006074-18006344	HepG2	liver:	n/a	chr21:18006223-18006234 chr21:18006222-18006235 chr21:18006089-18006102 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233 chr21:18006222-18006233 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233
14	CEBPB	chr21:18122184-18122509	H1-hESC	embryonic stem cell:	n/a	n/a
15	CEBPB	chr21:18017042-18017358	IMR90	lung:	n/a	chr21:18017181-18017192
16	CEBPB	chr21:18006060-18006440	ECC-1	luminal epithelium:	n/a	chr21:18006223-18006234 chr21:18006222-18006235 chr21:18006089-18006102 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233 chr21:18006222-18006233 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233
17	CEBPB	chr21:17972374-17972682	HepG2	liver:	n/a	chr21:17972534-17972543 chr21:17972532-17972543 chr21:17972532-17972545 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972533-17972544
18	CEBPB	chr21:17972383-17972662	Hela-S3	cervix:	n/a	chr21:17972534-17972543 chr21:17972532-17972543 chr21:17972532-17972545 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972533-17972544
19	CEBPB	chr21:18006132-18006316	K562	blood:	n/a	chr21:18006223-18006234 chr21:18006222-18006235 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233 chr21:18006222-18006233 chr21:18006224-18006233 chr21:18006222-18006235 chr21:18006224-18006233
20	CEBPB	chr21:18017103-18017255	HepG2	liver:	n/a	chr21:18017181-18017192
21	CEBPB	chr21:18139597-18139848	H1-hESC	embryonic stem cell:	n/a	chr21:18139714-18139725
22	CEBPB	chr21:18117308-18117603	HepG2	liver:	n/a	chr21:18117444-18117455 chr21:18117446-18117455 chr21:18117445-18117456
23	CEBPB	chr21:18117283-18117620	IMR90	lung:	n/a	chr21:18117444-18117455 chr21:18117446-18117455 chr21:18117445-18117456
24	CEBPB	chr21:17972387-17972707	IMR90	lung:	n/a	chr21:17972534-17972543 chr21:17972532-17972543 chr21:17972532-17972545 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972533-17972544
25	CEBPB	chr21:18139556-18139879	A549	lung:	n/a	chr21:18139714-18139725
26	CEBPB	chr21:18141078-18141213	HepG2	liver:	n/a	chr21:18141141-18141152
27	CEBPB	chr21:17972395-17972656	A549	lung:	n/a	chr21:17972534-17972543 chr21:17972532-17972543 chr21:17972532-17972545 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972533-17972544
28	CEBPB	chr21:17972514-17972553	K562	blood:	n/a	chr21:17972534-17972543 chr21:17972532-17972543 chr21:17972532-17972545 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972534-17972543 chr21:17972533-17972544
29	CTCF	chr21:17980840-17980990	HRPEpiC	eye:	n/a	n/a
30	CTCF	chr21:17980860-17981010	BE2_C	brain:	n/a	n/a
31	CTCF	chr21:17980940-17981090	AG09309	skin:	n/a	n/a
32	CTCF	chr21:18133786-18133899	GM20000	blood:	n/a	n/a
33	CTCF	chr21:17980871-17980999	Medullo	brain:	n/a	n/a
34	CTCF	chr21:17980860-17981010	SAEC	small airway:	n/a	n/a
35	CTCF	chr21:17980928-17980993	MCF-7	breast:	n/a	n/a
36	CTCF	chr21:17980917-17981001	Fibrobl	skin:	n/a	n/a
37	CTCF	chr21:17980893-17981025	A549	lung:	n/a	n/a
38	CTCF	chr21:17980840-17980990	HCPEpiC	choroid plexus:	n/a	n/a
39	CTCF	chr21:17980820-17980970	AG04449	skin:	n/a	n/a
40	CTCF	chr21:17980860-17981010	HepG2	liver:	n/a	n/a
41	CTCF	chr21:17980900-17981050	AG04450	lung:	n/a	n/a
42	CTCF	chr21:18092180-18092330	BJ	skin:	n/a	n/a
43	CTCF	chr21:17980840-17980990	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr21:17980880-17981030	HEEpiC	esophagus:	n/a	n/a
45	CTCF	chr21:18108940-18109090	GM12878	blood:	n/a	n/a
46	CTCF	chr21:18092200-18092350	HCPEpiC	choroid plexus:	n/a	n/a
47	CTCF	chr21:17980805-17981052	SK-N-SH_RA	brain:	n/a	n/a
48	CTCF	chr21:17980860-17981010	HVMF	connective:	n/a	n/a
49	CTCF	chr21:18013920-18014070	AG09319	gingival:	n/a	n/a
50	CTCF	chr21:17980860-17981010	WERI-Rb-1	eye:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:17266793..17267489-chr21:17980547..17981407,2	MCF-7	breast:
2	chr21:17826405..17827228-chr21:17980180..17981407,4	MCF-7	breast:
3	chr21:17990209..17992270-chr21:17993099..17994991,2	MCF-7	breast:
4	chr21:17991240..17993634-chr21:17994150..17995813,2	K562	blood:
5	chr17:56707808..56710358-chr21:18081731..18083628,2	MCF-7	breast:
6	chr21:17976261..17979732-chr21:17980310..17982604,3	K562	blood:
7	chr21:17976261..17979732-chr21:17980310..17982604,3	K562	blood:
8	chr21:17961458..17963589-chr21:17976639..17978962,2	MCF-7	breast:
9	chr21:17922083..17924811-chr21:17979948..17982331,2	MCF-7	breast:
10	chr21:17990209..17992270-chr21:17993099..17994991,2	MCF-7	breast:
11	chr21:17991240..17993634-chr21:17994150..17995813,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP25-2	chr21:17979314-17979542	ENSG00000215386
2	lnc-USP25-2	chr21:17979314-17979588	ENSG00000215386.6
3	lnc-USP25-3	chr21:18012549-18012950	NONHSAT081262
4	lnc-USP25-2	chr21:17979314-17979663	NONHSAT081235
5	lnc-USP25-3	chr21:18012549-18012952	ENSG00000228798
6	lnc-USP25-2	chr21:17979314-17979674	XLOC_013869
7	lnc-USP25-2	chr21:17979314-17979407	ENSG00000215386.6
8	lnc-BTG3-4	chr21:18126838-18127089	XLOC_014008
9	lnc-USP25-3	chr21:18003146-18003291	ENSG00000228798
10	lnc-USP25-3	chr21:18002157-18003451	NONHSAT081261
11	lnc-USP25-3	chr21:18011720-18011821	NONHSAT081261
12	lnc-USP25-2	chr21:17979314-17979471	ENSG00000215386.6
13	lnc-USP25-2	chr21:17979314-17979438	ENSG00000215386.6
14	lnc-USP25-3	chr21:17994101-17994624	NONHSAT081259
15	lnc-USP25-2	chr21:17979314-17979407	NONHSAT081257
16	lnc-USP25-2	chr21:17979314-17979438	ENSG00000215386
17	lnc-USP25-12	chr21:17999835-18000104	NONHSAT081260
18	lnc-USP25-2	chr21:17979314-17979542	ENSG00000215386.6
19	lnc-USP25-3	chr21:18014790-18015382	NONHSAT081259
20	lnc-USP25-2	chr21:17979314-17979569	ENSG00000215386
21	lnc-BTG3-4	chr21:18127999-18128117	ENSG00000237735.2
22	lnc-USP25-3	chr21:18009409-18009516	NONHSAT081261
23	lnc-USP25-2	chr21:17985769-17985800	ENSG00000215386.6
24	lnc-USP25-12	chr21:18000203-18000559	NONHSAT081260
25	lnc-USP25-2	chr21:17999496-17999716	ENSG00000215386.6
26	lnc-USP25-2	chr21:17999496-17999514	ENSG00000215386.6
27	lnc-USP25-2	chr21:17979314-17979407	ENSG00000215386.6
28	lnc-USP25-3	chr21:18015848-18017384	ENSG00000270093.1
29	lnc-USP25-3	chr21:18003760-18003808	NONHSAT081261
30	lnc-USP25-2	chr21:17979037-17979044	XLOC_013869
31	lnc-USP25-3	chr21:18012549-18013002	ENSG00000228798
32	lnc-USP25-2	chr21:17979314-17979407	ENSG00000215386.6
33	lnc-USP25-3	chr21:18003760-18003808	ENSG00000228798
34	lnc-USP25-3	chr21:18003110-18003291	NONHSAT081262
35	lnc-USP25-2	chr21:17979314-17979404	ENSG00000215386
36	lnc-USP25-2	chr21:17979314-17982094	ENSG00000215386
37	lnc-USP25-2	chr21:17991768-17992201	NONHSAT081257
38	lnc-USP25-2	chr21:17979314-17979450	ENSG00000215386
39	lnc-BTG3-9	chr21:18129204-18130014	NONHSAT081267
40	lnc-USP25-2	chr21:17979314-17979456	ENSG00000215386
41	lnc-BTG3-4	chr21:18127999-18128116	XLOC_014008
42	lnc-USP25-3	chr21:18003758-18003808	NONHSAT081259
43	lnc-USP25-2	chr21:17979314-17979450	ENSG00000215386.6
44	lnc-USP25-3	chr21:18001316-18002093	NONHSAT081259
45	lnc-USP25-3	chr21:17995057-17996255	NONHSAT081259
46	lnc-USP25-2	chr21:17979314-17982094	NONHSAT081228
47	lnc-USP25-2	chr21:17979314-17979457	ENSG00000215386.6
48	lnc-BTG3-4	chr21:18126838-18127089	ENSG00000237735.2
49	lnc-USP25-3	chr21:17997595-17998377	NONHSAT081259
50	lnc-USP25-3	chr21:18012512-18017814	NONHSAT081261

Variant related genes	Relation type
ENSG00000228798	TF binding region
RNU1-98P	TF binding region
ENSG00000270093	TF binding region
ENSG00000212195	chromatin interactions
ENSG00000207863	chromatin interactions
OLR1	miRNA target sites
SFRS12IP1	miRNA target sites
TMC7	miRNA target sites
UBE2I	miRNA target sites
CCND1	miRNA target sites
KIF5B	miRNA target sites
UBE2J1	miRNA target sites
DDX20	miRNA target sites
SOAT1	miRNA target sites
CCND2	miRNA target sites
SPTLC1	miRNA target sites
SECISBP2L	miRNA target sites

Extended variants
information (count: 3926 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:3926 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138399220	chr21:17967523-17967524	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs367592436	chr21:17967525-17967526	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs572098138	chr21:17967673-17967674	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs533962616	chr21:17967677-17967678	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs541175377	chr21:17967685-17967686	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs59204987	chr21:17967691-17967692	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs116594405	chr21:17967710-17967711	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs552011146	chr21:17967813-17967814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574303508	chr21:17967845-17967846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543179391	chr21:17967861-17967862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141370959	chr21:17967884-17967885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145161073	chr21:17967917-17967918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545766079	chr21:17967924-17967925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559343523	chr21:17968029-17968030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528042751	chr21:17968057-17968058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139018500	chr21:17968064-17968065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182870185	chr21:17968072-17968073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs149340085	chr21:17968086-17968087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs543599666	chr21:17968118-17968119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570133385	chr21:17968127-17968128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12482357	chr21:17968147-17968148	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs148106689	chr21:17968152-17968153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376939540	chr21:17968158-17968159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371317168	chr21:17968162-17968163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374220723	chr21:17968169-17968170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs534658973	chr21:17968181-17968182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567135426	chr21:17968182-17968183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528047035	chr21:17968206-17968207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs574566619	chr21:17968207-17968208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543531380	chr21:17968214-17968215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs548552909	chr21:17968215-17968216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576956399	chr21:17968221-17968222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs535737788	chr21:17968227-17968228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111287618	chr21:17968238-17968239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546128646	chr21:17968245-17968246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111983171	chr21:17968246-17968247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528105866	chr21:17968252-17968253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541817189	chr21:17968268-17968269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs111567691	chr21:17968270-17968271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs9977334	chr21:17968276-17968277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568354274	chr21:17968285-17968286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs11421184	chr21:17968289-17968290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61639096	chr21:17968306-17968307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112226997	chr21:17968315-17968316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs398036125	chr21:17968317-17968318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs141882379	chr21:17968345-17968346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550394021	chr21:17968376-17968377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs563953090	chr21:17968380-17968381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532550547	chr21:17968405-17968406	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530763256	chr21:17968421-17968422	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	18923514	CNVD
Alzheimer''s disease	20877625	CNVD
Follicular lymphoma	20505157	CNVD
Alzheimer''s disease	21956041	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Melanoma	18172304	CNVD
Autism	22958593	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Epilepsy	20502679	CNVD
22q11.2 microdeletion syndrome	19750312	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:529 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17960000-17970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:17961200-17968400	Weak transcription	Liver	Liver
3	chr21:17961200-17970200	Weak transcription	Psoas Muscle	Psoas
4	chr21:17961200-17971200	Weak transcription	Esophagus	oesophagus
5	chr21:17961200-17978000	Weak transcription	Fetal Muscle Leg	muscle
6	chr21:17961200-17978000	Weak transcription	Left Ventricle	heart
7	chr21:17961200-17978000	Weak transcription	Ovary	ovary
8	chr21:17961200-17979200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr21:17961200-17985200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr21:17961200-18003800	Weak transcription	Aorta	Aorta
11	chr21:17961400-17968600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr21:17961400-17968800	Weak transcription	Fetal Kidney	kidney
13	chr21:17961400-17977600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr21:17961400-17983200	Weak transcription	HSMMtube	muscle
15	chr21:17961400-17984000	Weak transcription	Osteobl	bone
16	chr21:17961800-17973400	Weak transcription	HUVEC	blood vessel
17	chr21:17962200-17987800	Weak transcription	Hela-S3	cervix
18	chr21:17963200-17977800	Weak transcription	Adipose Nuclei	Adipose
19	chr21:17963400-17968600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr21:17963400-17977200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr21:17963600-17981400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr21:17964400-17967800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr21:17965000-17977600	Weak transcription	Brain Anterior Caudate	brain
24	chr21:17965200-17970000	Weak transcription	Fetal Brain Female	brain
25	chr21:17965200-17977200	Weak transcription	Brain Angular Gyrus	brain
26	chr21:17965800-17969600	Weak transcription	Fetal Brain Male	brain
27	chr21:17966600-17967600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr21:17966800-17967600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr21:17966800-17967600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr21:17967600-17968400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr21:17967600-17968600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr21:17967600-17976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr21:17967800-17976000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr21:17968400-17969000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr21:17968400-17969000	Strong transcription	Liver	Liver
36	chr21:17968600-17969200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr21:17968600-17969200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr21:17968600-17969400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr21:17968800-17969000	Enhancers	Fetal Kidney	kidney
40	chr21:17969000-17975800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr21:17969000-17977800	Weak transcription	Fetal Kidney	kidney
42	chr21:17969000-18005200	Weak transcription	Liver	Liver
43	chr21:17969200-17977200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr21:17969200-17980200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr21:17969400-17979800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr21:17969600-17969800	Enhancers	Fetal Brain Male	brain
47	chr21:17969800-17975800	Weak transcription	Fetal Brain Male	brain
48	chr21:17970000-17970200	Enhancers	Fetal Brain Female	brain
49	chr21:17970200-17970400	Enhancers	Psoas Muscle	Psoas
50	chr21:17973400-17974000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links