Variant report

Variant	rs543599666
Chromosome Location	chr21:17968118-17968119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv834052	chr21:17967385-18142224	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17960000-17970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:17961200-17968400	Weak transcription	Liver	Liver
3	chr21:17961200-17970200	Weak transcription	Psoas Muscle	Psoas
4	chr21:17961200-17971200	Weak transcription	Esophagus	oesophagus
5	chr21:17961200-17978000	Weak transcription	Fetal Muscle Leg	muscle
6	chr21:17961200-17978000	Weak transcription	Left Ventricle	heart
7	chr21:17961200-17978000	Weak transcription	Ovary	ovary
8	chr21:17961200-17979200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr21:17961200-17985200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr21:17961200-18003800	Weak transcription	Aorta	Aorta
11	chr21:17961400-17968600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr21:17961400-17968800	Weak transcription	Fetal Kidney	kidney
13	chr21:17961400-17977600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr21:17961400-17983200	Weak transcription	HSMMtube	muscle
15	chr21:17961400-17984000	Weak transcription	Osteobl	bone
16	chr21:17961800-17973400	Weak transcription	HUVEC	blood vessel
17	chr21:17962200-17987800	Weak transcription	Hela-S3	cervix
18	chr21:17963200-17977800	Weak transcription	Adipose Nuclei	Adipose
19	chr21:17963400-17968600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr21:17963400-17977200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr21:17963600-17981400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr21:17965000-17977600	Weak transcription	Brain Anterior Caudate	brain
23	chr21:17965200-17970000	Weak transcription	Fetal Brain Female	brain
24	chr21:17965200-17977200	Weak transcription	Brain Angular Gyrus	brain
25	chr21:17965800-17969600	Weak transcription	Fetal Brain Male	brain
26	chr21:17967600-17968400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr21:17967600-17968600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr21:17967600-17976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr21:17967800-17976000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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