Variant report

Variant	nsv876870
Chromosome Location	chr3:61425165-61490746
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1232 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1232 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1901893	chr3:61425165-61425166	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs145884593	chr3:61425226-61425227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs534694072	chr3:61425314-61425315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs71616831	chr3:61425362-61425363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201252154	chr3:61425363-61425364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs538965381	chr3:61425405-61425406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538451208	chr3:61425418-61425419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11712558	chr3:61425444-61425445	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs113186052	chr3:61425487-61425488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184609427	chr3:61425515-61425516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188924608	chr3:61425540-61425541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs149376356	chr3:61425558-61425559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs115574571	chr3:61425573-61425574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs554244995	chr3:61425582-61425583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs111618959	chr3:61425631-61425632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544991247	chr3:61425653-61425654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs76328226	chr3:61425664-61425665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs530695105	chr3:61425674-61425675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs36070752	chr3:61425684-61425685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs377624257	chr3:61425696-61425697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs57796687	chr3:61425717-61425718	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs561056917	chr3:61425739-61425740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs528239292	chr3:61425766-61425767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7433693	chr3:61425780-61425781	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs571270504	chr3:61425797-61425798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs541876542	chr3:61425827-61425828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7433711	chr3:61425845-61425846	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs13058743	chr3:61425852-61425853	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs374234577	chr3:61425941-61425942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113832783	chr3:61425962-61425963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554782847	chr3:61425967-61425968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371432042	chr3:61425994-61425995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534037063	chr3:61426001-61426002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192773011	chr3:61426002-61426003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs146334720	chr3:61426005-61426006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544623950	chr3:61426015-61426016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs114545585	chr3:61426054-61426055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184803930	chr3:61426093-61426094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189358189	chr3:61426132-61426133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561063187	chr3:61426133-61426134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs34224499	chr3:61426171-61426172	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs546732000	chr3:61426179-61426180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs72884868	chr3:61426257-61426258	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs180851499	chr3:61426322-61426323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs377349801	chr3:61426346-61426347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550585010	chr3:61426368-61426369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568750949	chr3:61426382-61426383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184896525	chr3:61426433-61426434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4282056	chr3:61426473-61426474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs139658115	chr3:61426571-61426572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	19490591	CNVD
Autism	18414403	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-small cell lung cancer	20864512	CNVD
Metastatic melanoma	17975146	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Urothelial cell carcinoma	18451213	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Colorectal cancer	16272173	CNVD
Mental retardation	17847001	CNVD
Neuroticism	17667963	CNVD
Squamous cell cancer	19047905	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Cancer	20164920	CNVD
Autism	22102821	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:149 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61423800-61425400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:61424000-61425200	Enhancers	Fetal Intestine Small	intestine
3	chr3:61424000-61425400	Enhancers	Fetal Lung	lung
4	chr3:61424000-61425400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:61424800-61425400	Enhancers	Psoas Muscle	Psoas
6	chr3:61425000-61425400	Enhancers	Liver	Liver
7	chr3:61425400-61429000	Weak transcription	Fetal Lung	lung
8	chr3:61425400-61429000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:61425400-61432800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:61428800-61430400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:61429000-61429800	Enhancers	Fetal Lung	lung
12	chr3:61429000-61429800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr3:61429200-61429800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:61429400-61429600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:61429600-61430000	Enhancers	HSMM	muscle
16	chr3:61429800-61430200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:61429800-61431600	Weak transcription	Fetal Lung	lung
18	chr3:61429800-61433400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:61430000-61432800	Weak transcription	HSMM	muscle
20	chr3:61430200-61430400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:61430400-61433000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:61430400-61433200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:61431600-61433200	Enhancers	Fetal Lung	lung
24	chr3:61431800-61432000	Enhancers	Brain Germinal Matrix	brain
25	chr3:61431800-61440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:61432000-61432600	Weak transcription	Brain Germinal Matrix	brain
27	chr3:61432600-61433400	Enhancers	Brain Germinal Matrix	brain
28	chr3:61432600-61435200	Enhancers	HSMMtube	muscle
29	chr3:61432800-61433600	Enhancers	HSMM	muscle
30	chr3:61432800-61434600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:61433000-61434800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:61433200-61433600	Enhancers	Psoas Muscle	Psoas
33	chr3:61433200-61435200	Weak transcription	Fetal Lung	lung
34	chr3:61433200-61435600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:61433400-61433600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:61433400-61436200	Enhancers	Adipose Nuclei	Adipose
37	chr3:61433600-61434000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:61433600-61434400	Weak transcription	Psoas Muscle	Psoas
39	chr3:61433600-61434400	Weak transcription	HSMM	muscle
40	chr3:61433800-61436200	Enhancers	Fetal Muscle Leg	muscle
41	chr3:61434000-61434800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr3:61434200-61435600	Enhancers	Left Ventricle	heart
43	chr3:61434200-61435800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr3:61434200-61436200	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr3:61434200-61436800	Enhancers	Fetal Intestine Large	intestine
46	chr3:61434400-61434600	Enhancers	Psoas Muscle	Psoas
47	chr3:61434400-61435600	Enhancers	HSMM	muscle
48	chr3:61434400-61435800	Enhancers	Right Atrium	heart
49	chr3:61434400-61436600	Enhancers	Fetal Intestine Small	intestine
50	chr3:61434800-61439000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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