Variant report

Variant	rs1901893
Chromosome Location	chr3:61425165-61425166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1115924	1.00[EUR][1000 genomes]
rs1115925	1.00[EUR][1000 genomes]
rs1115926	1.00[EUR][1000 genomes]
rs1377633	1.00[EUR][1000 genomes]
rs1453755	1.00[EUR][1000 genomes]
rs1453757	1.00[EUR][1000 genomes]
rs1545531	1.00[EUR][1000 genomes]
rs1563136	1.00[EUR][1000 genomes]
rs1563137	1.00[EUR][1000 genomes]
rs1563138	1.00[EUR][1000 genomes]
rs1869406	1.00[EUR][1000 genomes]
rs2045081	1.00[EUR][1000 genomes]
rs2365957	1.00[EUR][1000 genomes]
rs34027048	1.00[EUR][1000 genomes]
rs4234684	1.00[EUR][1000 genomes]
rs4688482	1.00[EUR][1000 genomes]
rs4688539	1.00[EUR][1000 genomes]
rs60049744	1.00[EUR][1000 genomes]
rs6789944	1.00[EUR][1000 genomes]
rs7372403	1.00[EUR][1000 genomes]
rs7433711	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7629203	1.00[EUR][1000 genomes]
rs7644768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311813	1.00[EUR][1000 genomes]
rs9844014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv876869	chr3:61357417-61444443	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv590432	chr3:61416169-61425165	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv876870	chr3:61425165-61490746	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61423800-61425400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:61424000-61425200	Enhancers	Fetal Intestine Small	intestine
3	chr3:61424000-61425400	Enhancers	Fetal Lung	lung
4	chr3:61424000-61425400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:61424800-61425400	Enhancers	Psoas Muscle	Psoas
6	chr3:61425000-61425400	Enhancers	Liver	Liver

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