Variant report

Variant	rs1545531
Chromosome Location	chr3:61461035-61461036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1115924	1.00[EUR][1000 genomes]
rs1115925	1.00[EUR][1000 genomes]
rs1115926	1.00[EUR][1000 genomes]
rs1377633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453755	1.00[EUR][1000 genomes]
rs1453757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1563138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1901893	1.00[EUR][1000 genomes]
rs2045081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365758	0.84[AFR][1000 genomes]
rs2365957	1.00[EUR][1000 genomes]
rs34027048	1.00[EUR][1000 genomes]
rs4234684	1.00[EUR][1000 genomes]
rs4688482	1.00[EUR][1000 genomes]
rs4688539	1.00[EUR][1000 genomes]
rs60049744	1.00[EUR][1000 genomes]
rs6789944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7372403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7433711	1.00[EUR][1000 genomes]
rs7629203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644768	1.00[EUR][1000 genomes]
rs9311813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv876870	chr3:61425165-61490746	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61460800-61461200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:61461000-61461600	Weak transcription	Ovary	ovary

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