Variant report
| Variant | rs1869406 |
|---|---|
| Chromosome Location | chr3:61404526-61404527 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1115924 | 1.00[EUR][1000 genomes] |
| rs1115925 | 1.00[EUR][1000 genomes] |
| rs1115926 | 1.00[EUR][1000 genomes] |
| rs1377633 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1453755 | 1.00[EUR][1000 genomes] |
| rs1453757 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1545531 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1563136 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1563137 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1563138 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1901893 | 1.00[EUR][1000 genomes] |
| rs2045081 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2365957 | 1.00[EUR][1000 genomes] |
| rs34027048 | 1.00[EUR][1000 genomes] |
| rs4234684 | 1.00[EUR][1000 genomes] |
| rs4688482 | 1.00[EUR][1000 genomes] |
| rs4688539 | 1.00[EUR][1000 genomes] |
| rs60049744 | 1.00[EUR][1000 genomes] |
| rs6789944 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7372403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7433711 | 1.00[EUR][1000 genomes] |
| rs7629203 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7644768 | 1.00[EUR][1000 genomes] |
| rs9311813 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9844014 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876867 | chr3:61054494-61474575 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv432423 | chr3:61100255-61606060 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1008399 | chr3:61176965-61461349 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv590426 | chr3:61356250-61405827 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv876869 | chr3:61357417-61444443 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:61404400-61405200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
