Variant report

Variant	rs60049744
Chromosome Location	chr3:61317940-61317941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1115924	1.00[EUR][1000 genomes]
rs1115925	1.00[EUR][1000 genomes]
rs1115926	1.00[EUR][1000 genomes]
rs1377633	1.00[EUR][1000 genomes]
rs1453755	1.00[EUR][1000 genomes]
rs1453757	1.00[EUR][1000 genomes]
rs1545531	1.00[EUR][1000 genomes]
rs1563136	1.00[EUR][1000 genomes]
rs1563137	1.00[EUR][1000 genomes]
rs1563138	1.00[EUR][1000 genomes]
rs1869406	1.00[EUR][1000 genomes]
rs1901893	1.00[EUR][1000 genomes]
rs2045081	1.00[EUR][1000 genomes]
rs4234684	1.00[EUR][1000 genomes]
rs4688482	1.00[EUR][1000 genomes]
rs4688539	1.00[EUR][1000 genomes]
rs6789944	1.00[EUR][1000 genomes]
rs7372403	1.00[EUR][1000 genomes]
rs7433711	1.00[EUR][1000 genomes]
rs7629203	1.00[EUR][1000 genomes]
rs7644768	1.00[EUR][1000 genomes]
rs9311813	1.00[EUR][1000 genomes]
rs9811233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9844014	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv532626	chr3:61159646-61388418	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv998982	chr3:61252469-61364001	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61317200-61318000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:61317200-61318400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr3:61317200-61318800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:61317200-61321000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:61317200-61321000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:61317400-61318000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:61317400-61318200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:61317400-61320800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:61317400-61320800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:61317600-61319000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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