Variant report

Variant	nsv877128
Chromosome Location	chr3:86845934-86952516
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-4	chr3:86851058-86851827	l_2406_chr3:86790895-86851827_testes
2	lnc-CHMP2B-4	chr3:86849266-86849367	l_2406_chr3:86790895-86851827_testes

Extended variants
information (count: 3130 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:3130 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12489711	chr3:86845934-86845935	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs184380891	chr3:86845948-86845949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs552899965	chr3:86845959-86845960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs578195741	chr3:86845961-86845962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111629851	chr3:86846058-86846059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557321546	chr3:86846090-86846091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189271917	chr3:86846164-86846165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568436245	chr3:86846172-86846173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs542744020	chr3:86846182-86846183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147658087	chr3:86846195-86846196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528536215	chr3:86846242-86846243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142653819	chr3:86846247-86846248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375217790	chr3:86846277-86846278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181781166	chr3:86846283-86846284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565242420	chr3:86846334-86846335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs73844288	chr3:86846362-86846363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79333434	chr3:86846370-86846371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs35598063	chr3:86846375-86846376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs569785033	chr3:86846428-86846429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs76213271	chr3:86846432-86846433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs569363827	chr3:86846452-86846453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200848644	chr3:86846467-86846468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77476746	chr3:86846471-86846472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374014850	chr3:86846472-86846473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs77927599	chr3:86846485-86846486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs115111322	chr3:86846527-86846528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562378475	chr3:86846633-86846634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567385722	chr3:86846713-86846714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534667234	chr3:86846724-86846725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552698693	chr3:86846733-86846734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538391871	chr3:86846758-86846759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186300474	chr3:86846768-86846769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143406531	chr3:86846773-86846774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557615265	chr3:86846776-86846777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs1437049	chr3:86846778-86846779	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs542833499	chr3:86846784-86846785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188755354	chr3:86846826-86846827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557488568	chr3:86846848-86846849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs181550057	chr3:86846872-86846873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540674624	chr3:86846902-86846903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565180413	chr3:86846906-86846907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186937530	chr3:86846937-86846938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545003541	chr3:86846942-86846943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs58503043	chr3:86846943-86846944	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs148372520	chr3:86846966-86846967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549209544	chr3:86847010-86847011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs554822457	chr3:86847077-86847078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561020413	chr3:86847078-86847079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs117364700	chr3:86847099-86847100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs546667987	chr3:86847125-86847126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:265 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:86844000-86849400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:86844600-86847200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:86844600-86849400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:86844600-86849600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:86844600-86850800	Weak transcription	HSMM	muscle
7	chr3:86844800-86848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:86844800-86849000	Weak transcription	NHDF-Ad	bronchial
9	chr3:86845000-86847200	Weak transcription	Osteobl	bone
10	chr3:86847200-86848200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:86847200-86848400	Enhancers	Osteobl	bone
12	chr3:86848000-86848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:86848200-86848800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:86848200-86850800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:86848400-86849400	Weak transcription	Osteobl	bone
16	chr3:86848800-86849200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:86849000-86852000	Enhancers	NHDF-Ad	bronchial
18	chr3:86849200-86849400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:86849400-86849800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:86849400-86849800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:86849400-86849800	Enhancers	HSMMtube	muscle
22	chr3:86849400-86849800	Enhancers	Osteobl	bone
23	chr3:86849400-86851800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:86849600-86849800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:86849600-86849800	Enhancers	Pancreas	Pancrea
26	chr3:86849800-86851000	Weak transcription	Osteobl	bone
27	chr3:86849800-86852800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:86850800-86851600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:86850800-86851600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr3:86850800-86852000	Enhancers	HSMM	muscle
31	chr3:86851000-86851600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:86851000-86851800	Enhancers	Osteobl	bone
33	chr3:86852000-86854400	Weak transcription	NHDF-Ad	bronchial
34	chr3:86852800-86853000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:86854600-86854800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:86855600-86863600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:86858000-86863600	Weak transcription	HSMMtube	muscle
38	chr3:86862200-86864000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:86863200-86863600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:86863200-86863600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:86863200-86863600	Enhancers	Brain Anterior Caudate	brain
42	chr3:86863200-86863800	Enhancers	Brain Hippocampus Middle	brain
43	chr3:86863200-86864000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr3:86863200-86864000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr3:86863200-86864400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr3:86863200-86864600	Enhancers	Brain Cingulate Gyrus	brain
47	chr3:86863200-86864600	Enhancers	Brain Substantia Nigra	brain
48	chr3:86863200-86865000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:86863200-86865200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr3:86863200-86865200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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