Variant report
Variant | rs1437049 |
---|---|
Chromosome Location | chr3:86846778-86846779 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10470570 | 0.84[EUR][1000 genomes] |
rs11127959 | 0.89[EUR][1000 genomes] |
rs11714652 | 0.96[EUR][1000 genomes] |
rs11718876 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11718877 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11718975 | 0.85[EUR][1000 genomes] |
rs11917335 | 0.85[EUR][1000 genomes] |
rs11919691 | 0.83[EUR][1000 genomes] |
rs12487818 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12489293 | 0.95[EUR][1000 genomes] |
rs12489298 | 0.95[EUR][1000 genomes] |
rs12489313 | 0.95[EUR][1000 genomes] |
rs12493521 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12495229 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12495954 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12637913 | 0.86[EUR][1000 genomes] |
rs12637947 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1370209 | 0.81[EUR][1000 genomes] |
rs1370210 | 0.81[EUR][1000 genomes] |
rs1370212 | 0.86[EUR][1000 genomes] |
rs1437047 | 0.94[EUR][1000 genomes] |
rs1437048 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1437055 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1583577 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1583578 | 0.96[EUR][1000 genomes] |
rs17364877 | 0.86[EUR][1000 genomes] |
rs2043685 | 0.97[EUR][1000 genomes] |
rs2083018 | 0.89[EUR][1000 genomes] |
rs2118188 | 0.95[EUR][1000 genomes] |
rs2118189 | 0.95[EUR][1000 genomes] |
rs2118190 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2118191 | 0.96[EUR][1000 genomes] |
rs2118192 | 0.97[EUR][1000 genomes] |
rs2164647 | 0.96[EUR][1000 genomes] |
rs2324795 | 0.95[EUR][1000 genomes] |
rs28553515 | 0.95[EUR][1000 genomes] |
rs28894812 | 0.96[EUR][1000 genomes] |
rs35309716 | 0.86[EUR][1000 genomes] |
rs36015800 | 0.95[EUR][1000 genomes] |
rs4425259 | 0.95[EUR][1000 genomes] |
rs4572769 | 0.97[EUR][1000 genomes] |
rs4855148 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4855174 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs55711545 | 0.81[EUR][1000 genomes] |
rs55719700 | 0.85[EUR][1000 genomes] |
rs56044242 | 0.87[EUR][1000 genomes] |
rs57877392 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs59662471 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6775872 | 0.85[EUR][1000 genomes] |
rs6777551 | 0.81[EUR][1000 genomes] |
rs6779214 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6782806 | 0.95[EUR][1000 genomes] |
rs6807530 | 0.96[EUR][1000 genomes] |
rs728179 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs728180 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73133829 | 0.84[EUR][1000 genomes] |
rs73137958 | 0.96[EUR][1000 genomes] |
rs73137985 | 0.95[EUR][1000 genomes] |
rs73139911 | 0.95[EUR][1000 genomes] |
rs73139914 | 0.95[EUR][1000 genomes] |
rs73139922 | 0.95[EUR][1000 genomes] |
rs73139923 | 0.95[EUR][1000 genomes] |
rs7628864 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7630849 | 0.97[EUR][1000 genomes] |
rs7631441 | 0.86[EUR][1000 genomes] |
rs920188 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9631517 | 0.96[EUR][1000 genomes] |
rs9756254 | 0.83[EUR][1000 genomes] |
rs9815344 | 0.89[EUR][1000 genomes] |
rs9815450 | 0.89[EUR][1000 genomes] |
rs9816006 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9818400 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9819570 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9819897 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9821486 | 0.88[EUR][1000 genomes] |
rs9833108 | 0.88[EUR][1000 genomes] |
rs9841059 | 0.88[EUR][1000 genomes] |
rs9844776 | 0.97[EUR][1000 genomes] |
rs9850281 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9859483 | 0.83[EUR][1000 genomes] |
rs9862624 | 0.83[EUR][1000 genomes] |
rs9864625 | 0.95[EUR][1000 genomes] |
rs9866183 | 0.87[EUR][1000 genomes] |
rs9881535 | 0.96[EUR][1000 genomes] |
rs9985323 | 0.83[EUR][1000 genomes] |
rs9985324 | 0.83[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877116 | chr3:86518318-86964922 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv877117 | chr3:86665408-86927574 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv877118 | chr3:86722823-86927574 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv877119 | chr3:86722823-86952516 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | nsv877120 | chr3:86722823-86961118 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
6 | nsv877121 | chr3:86732817-86916882 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
7 | nsv877122 | chr3:86732817-86927574 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
8 | nsv877123 | chr3:86732817-86952516 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
9 | nsv877125 | chr3:86794501-86916882 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | nsv877126 | chr3:86794501-86927574 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
11 | nsv519148 | chr3:86831077-86995124 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
12 | nsv877127 | chr3:86832039-86952516 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
13 | nsv1008177 | chr3:86841615-86905761 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
14 | nsv877128 | chr3:86845934-86952516 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
15 | nsv877129 | chr3:86845934-86964922 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:86836600-86864400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr3:86844000-86849400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr3:86844600-86847200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
4 | chr3:86844600-86849400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
5 | chr3:86844600-86849600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
6 | chr3:86844600-86850800 | Weak transcription | HSMM | muscle |
7 | chr3:86844800-86848000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
8 | chr3:86844800-86849000 | Weak transcription | NHDF-Ad | bronchial |
9 | chr3:86845000-86847200 | Weak transcription | Osteobl | bone |