Variant report

Variant	rs9862624
Chromosome Location	chr3:86780700-86780701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10470570	0.90[EUR][1000 genomes]
rs11127959	0.86[EUR][1000 genomes]
rs11718876	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718877	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718975	0.91[EUR][1000 genomes]
rs11917335	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11919691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487818	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12493521	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12495229	0.81[EUR][1000 genomes]
rs12495954	0.83[EUR][1000 genomes]
rs12637947	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1370209	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1370210	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1370212	0.90[EUR][1000 genomes]
rs1437048	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1437049	0.83[EUR][1000 genomes]
rs1437055	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1583577	0.82[EUR][1000 genomes]
rs17364877	0.90[EUR][1000 genomes]
rs1808799	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2043685	0.81[EUR][1000 genomes]
rs2083018	0.86[EUR][1000 genomes]
rs2118190	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118191	0.80[EUR][1000 genomes]
rs28453822	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28894812	0.80[EUR][1000 genomes]
rs35309716	0.90[EUR][1000 genomes]
rs4572769	0.80[EUR][1000 genomes]
rs4855148	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4855174	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55711545	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55719700	0.91[EUR][1000 genomes]
rs56044242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57877392	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59662471	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6775872	0.91[EUR][1000 genomes]
rs6777551	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6779214	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs728179	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs728180	0.83[EUR][1000 genomes]
rs73133829	0.90[EUR][1000 genomes]
rs7631441	0.90[EUR][1000 genomes]
rs893165	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs920188	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9756254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815344	0.86[EUR][1000 genomes]
rs9815450	0.88[EUR][1000 genomes]
rs9816006	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9818400	0.83[EUR][1000 genomes]
rs9819570	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819897	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9821486	0.87[EUR][1000 genomes]
rs9833108	0.87[EUR][1000 genomes]
rs9841059	0.87[EUR][1000 genomes]
rs9850281	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9858679	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9859483	0.88[EUR][1000 genomes]
rs9866183	0.87[EUR][1000 genomes]
rs9881535	0.80[EUR][1000 genomes]
rs9985323	0.88[EUR][1000 genomes]
rs9985324	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1794028	chr3:86684769-86822085	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
5	esv1827728	chr3:86684769-86822085	Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
6	nsv1005747	chr3:86701703-86792434	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	11 gene(s)	inside rSNPs	n/a
7	nsv536630	chr3:86701703-86792434	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
8	nsv999877	chr3:86704171-86795449	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
9	nsv527690	chr3:86711294-86794501	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	10 gene(s)	inside rSNPs	n/a
10	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv877124	chr3:86760197-86796492	Active TSS Weak transcription Enhancers ZNF genes & repeats	lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86780600-86781000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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