Variant report

Variant	rs55719700
Chromosome Location	chr3:86782567-86782568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10470570	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11127959	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11714652	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917335	0.86[EUR][1000 genomes]
rs11919691	0.91[EUR][1000 genomes]
rs12489293	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12489298	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12489313	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12493521	0.88[EUR][1000 genomes]
rs12495229	0.83[EUR][1000 genomes]
rs12495954	0.85[EUR][1000 genomes]
rs12637913	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1370209	0.91[EUR][1000 genomes]
rs1370210	0.91[EUR][1000 genomes]
rs1370212	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437047	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437049	0.85[EUR][1000 genomes]
rs1437055	0.86[EUR][1000 genomes]
rs1583577	0.84[EUR][1000 genomes]
rs1583578	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17364877	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808799	0.80[EUR][1000 genomes]
rs2011715	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2043685	0.88[EUR][1000 genomes]
rs2083018	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2118188	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2118189	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2118191	0.87[EUR][1000 genomes]
rs2118192	0.87[EUR][1000 genomes]
rs2164647	0.86[EUR][1000 genomes]
rs2324795	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28453822	0.85[EUR][1000 genomes]
rs28553515	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2875443	0.83[ASN][1000 genomes]
rs28894812	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35309716	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36015800	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4425259	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4572769	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4855148	0.88[EUR][1000 genomes]
rs4855174	0.88[EUR][1000 genomes]
rs55711545	0.89[EUR][1000 genomes]
rs56044242	0.87[EUR][1000 genomes]
rs6775872	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777551	0.91[EUR][1000 genomes]
rs6779214	0.88[EUR][1000 genomes]
rs6782806	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6807530	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs728180	0.85[EUR][1000 genomes]
rs73133829	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73137958	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73137985	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73139911	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73139914	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73139922	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73139923	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7630849	0.87[EUR][1000 genomes]
rs7631441	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893165	0.80[EUR][1000 genomes]
rs920188	0.88[EUR][1000 genomes]
rs9631517	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9756254	0.91[EUR][1000 genomes]
rs9815344	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9815450	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9818400	0.85[EUR][1000 genomes]
rs9821486	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9833108	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9841059	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9844776	0.87[EUR][1000 genomes]
rs9858679	0.82[EUR][1000 genomes]
rs9859483	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9862624	0.91[EUR][1000 genomes]
rs9864625	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9866183	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881535	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9985323	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9985324	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1794028	chr3:86684769-86822085	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
5	esv1827728	chr3:86684769-86822085	Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
6	nsv1005747	chr3:86701703-86792434	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	11 gene(s)	inside rSNPs	n/a
7	nsv536630	chr3:86701703-86792434	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
8	nsv999877	chr3:86704171-86795449	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
9	nsv527690	chr3:86711294-86794501	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	10 gene(s)	inside rSNPs	n/a
10	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv877124	chr3:86760197-86796492	Active TSS Weak transcription Enhancers ZNF genes & repeats	lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86782400-86782600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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