Variant report

Variant	nsv877361
Chromosome Location	chr3:116017931-116138039
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:634)
CpG islands
(count:427)
Chromatin interactive
region (count:15)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:634 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr3:116060636-116061258	GM12878	blood:	n/a	n/a
2	ATF2	chr3:116057508-116058027	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr3:116060703-116061203	GM12878	blood:	n/a	n/a
4	BACH1	chr3:116060668-116060743	H1-hESC	embryonic stem cell:	n/a	n/a
5	BATF	chr3:116060763-116061144	GM12878	blood:	n/a	n/a
6	BATF	chr3:116113324-116113485	GM12878	blood:	n/a	chr3:116113419-116113430 chr3:116113365-116113374 chr3:116113420-116113430 chr3:116113404-116113415
7	BCL11A	chr3:116060884-116061091	GM12878	blood:	n/a	n/a
8	BCL11A	chr3:116060739-116061157	GM12878	blood:	n/a	n/a
9	BCL11A	chr3:116018614-116018809	GM12878	blood:	n/a	chr3:116018690-116018699
10	BCL3	chr3:116060775-116061142	GM12878	blood:	n/a	n/a
11	BHLHE40	chr3:116059632-116059672	GM12878	blood:	n/a	n/a
12	BHLHE40	chr3:116060691-116061734	GM12878	blood:	n/a	n/a
13	CCNT2	chr3:116033373-116033660	K562	blood:	n/a	chr3:116033475-116033495
14	CEBPB	chr3:116127354-116127936	K562	blood:	n/a	chr3:116127522-116127533
15	CEBPB	chr3:116127337-116127861	Hela-S3	cervix:	n/a	chr3:116127522-116127533
16	CEBPB	chr3:116127379-116127883	H1-hESC	embryonic stem cell:	n/a	chr3:116127522-116127533
17	CEBPB	chr3:116055968-116056252	K562	blood:	n/a	chr3:116056100-116056111
18	CEBPB	chr3:116127341-116127913	HepG2	liver:	n/a	chr3:116127522-116127533
19	CEBPB	chr3:116060655-116061291	GM12878	blood:	n/a	n/a
20	CEBPB	chr3:116127366-116127616	K562	blood:	n/a	chr3:116127522-116127533
21	CEBPB	chr3:116127340-116127949	IMR90	lung:	n/a	chr3:116127522-116127533
22	CEBPB	chr3:116127361-116127943	A549	lung:	n/a	chr3:116127522-116127533
23	CEBPB	chr3:116055969-116056274	IMR90	lung:	n/a	chr3:116056100-116056111
24	CEBPB	chr3:116067243-116067257	H1-hESC	embryonic stem cell:	n/a	n/a
25	CEBPB	chr3:116111775-116111978	HepG2	liver:	n/a	chr3:116111869-116111880
26	CEBPB	chr3:116055948-116056264	HepG2	liver:	n/a	chr3:116056100-116056111
27	CEBPB	chr3:116055954-116056178	A549	lung:	n/a	chr3:116056100-116056111
28	CEBPB	chr3:116127317-116127753	A549	lung:	n/a	chr3:116127522-116127533
29	CEBPB	chr3:116059544-116059914	IMR90	lung:	n/a	n/a
30	CHD1	chr3:116060617-116060817	GM12878	blood:	n/a	n/a
31	CHD1	chr3:116061371-116061728	GM12878	blood:	n/a	n/a
32	CHD2	chr3:116018016-116019054	GM12878	blood:	n/a	n/a
33	CHD2	chr3:116060711-116061182	GM12878	blood:	n/a	n/a
34	CHD2	chr3:116067196-116067257	H1-hESC	embryonic stem cell:	n/a	n/a
35	CHD2	chr3:116061401-116061774	GM12878	blood:	n/a	n/a
36	CHD2	chr3:116062500-116062507	GM12878	blood:	n/a	n/a
37	CHD2	chr3:116059614-116059787	GM12878	blood:	n/a	n/a
38	CHD2	chr3:116086850-116087132	GM12878	blood:	n/a	n/a
39	CREB1	chr3:116060730-116061182	H1-hESC	embryonic stem cell:	n/a	n/a
40	CREB1	chr3:116061370-116061909	GM12878	blood:	n/a	n/a
41	CREB1	chr3:116060594-116061273	GM12878	blood:	n/a	n/a
42	CREB1	chr3:116058336-116058753	GM12878	blood:	n/a	n/a
43	CTCF	chr3:116056220-116056370	HepG2	liver:	n/a	chr3:116056268-116056281 chr3:116056261-116056282 chr3:116056271-116056279 chr3:116056267-116056283
44	CTCF	chr3:116056180-116056330	HA-sp	spinal cord:	n/a	chr3:116056268-116056281 chr3:116056261-116056282 chr3:116056271-116056279 chr3:116056267-116056283
45	CTCF	chr3:116056280-116056430	MCF-7	breast:	n/a	n/a
46	CTCF	chr3:116056300-116056450	AG04450	lung:	n/a	n/a
47	CTCF	chr3:116056218-116056339	LNCaP	prostate:	n/a	chr3:116056261-116056282 chr3:116056271-116056279 chr3:116056267-116056283 chr3:116056268-116056281
48	CTCF	chr3:116056104-116056461	GM12878	blood:	n/a	chr3:116056268-116056281 chr3:116056261-116056282 chr3:116056271-116056279 chr3:116056267-116056283
49	CTCF	chr3:116132300-116132450	GM06990	blood:	n/a	n/a
50	CTCF	chr3:116105128-116105292	K562	blood:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:116058982-116059032	GM12892	blood:	n/a
2	chr3:116018418-116018468	HRE	kidney:	n/a
3	chr3:116118097-116118147	NB4	blood:	n/a
4	chr3:116118097-116118147	HUVEC	blood vessel:	n/a
5	chr3:116079127-116079177	SKMC	muscle:	n/a
6	chr3:116079127-116079177	Hepatocyte	liver:	n/a
7	chr3:116079127-116079177	HL-60	blood:	n/a
8	chr3:116058982-116059032	SK-N-MC	brain:	n/a
9	chr3:116134983-116135033	PrEC	prostate:	n/a
10	chr3:116108178-116108228	GM06990	blood:	n/a
11	chr3:116018418-116018468	AoSMC	blood vessel:	n/a
12	chr3:116118097-116118147	HRCEpiC	kidney:	n/a
13	chr3:116108178-116108228	HepG2	liver:	n/a
14	chr3:116108178-116108228	SAEC	small airway:	n/a
15	chr3:116118097-116118147	HPAEpiC	pulmonary alveolar:	n/a
16	chr3:116108178-116108228	AG04449	skin:	fetal
17	chr3:116108178-116108228	HCPEpiC	choroid plexus:	n/a
18	chr3:116018418-116018468	T-47D	breast:	n/a
19	chr3:116079127-116079177	HepG2	liver:	n/a
20	chr3:116018418-116018468	GM12891	blood:	n/a
21	chr3:116108178-116108228	IMR90	lung:	fetal
22	chr3:116079112-116079162	K562	blood:	n/a
23	chr3:116134983-116135033	HIPEpiC	eye:	n/a
24	chr3:116079112-116079162	GM12891	blood:	n/a
25	chr3:116134983-116135033	AG04449	skin:	fetal
26	chr3:116118097-116118147	SKMC	muscle:	n/a
27	chr3:116118097-116118147	GM12878	blood:	n/a
28	chr3:116079127-116079177	HUVEC	blood vessel:	n/a
29	chr3:116079127-116079177	ovcar-3	ovarian:	n/a
30	chr3:116079112-116079162	AoSMC	blood vessel:	n/a
31	chr3:116118097-116118147	SAEC	small airway:	n/a
32	chr3:116018418-116018468	A549	lung:	n/a
33	chr3:116108178-116108228	LNCaP	prostate:	n/a
34	chr3:116079112-116079162	AG04449	skin:	fetal
35	chr3:116058982-116059032	NHDF-neo	bronchial:	n/a
36	chr3:116058982-116059032	ProgFib	skin:	n/a
37	chr3:116134983-116135033	SAEC	small airway:	n/a
38	chr3:116079112-116079162	H1-hESC	embryonic stem cell:	embryo
39	chr3:116118097-116118147	MCF10A-Er-Src	breast:	n/a
40	chr3:116108178-116108228	HEEpiC	esophagus:	n/a
41	chr3:116018418-116018468	HPAEpiC	pulmonary alveolar:	n/a
42	chr3:116018418-116018468	PrEC	prostate:	n/a
43	chr3:116058982-116059032	GM12878	blood:	n/a
44	chr3:116079112-116079162	NT2-D1	testis:	n/a
45	chr3:116108178-116108228	SK-N-MC	brain:	n/a
46	chr3:116108178-116108228	NT2-D1	testis:	n/a
47	chr3:116018418-116018468	PFSK-1	brain:	n/a
48	chr3:116018418-116018468	HCF	heart:	n/a
49	chr3:116118097-116118147	HAEpiC	amniotic membrane:	n/a
50	chr3:116079112-116079162	SKMC	muscle:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:116046151..116048173-chr3:116049093..116051195,2	MCF-7	breast:
2	chr3:116116203..116118718-chr3:116119637..116121957,2	K562	blood:
3	chr3:116116203..116118718-chr3:116119637..116121957,2	K562	blood:
4	chr3:116065365..116068537-chr3:116070392..116072433,3	K562	blood:
5	chr3:116065365..116068537-chr3:116070392..116072433,3	K562	blood:
6	chr3:116068430..116070631-chr3:116074599..116076825,2	K562	blood:
7	chr3:116068430..116070631-chr3:116074599..116076825,2	K562	blood:
8	chr3:116038102..116041332-chr3:116053256..116055932,3	K562	blood:
9	chr3:116135316..116137426-chr3:116138160..116140553,2	K562	blood:
10	chr3:116046151..116048173-chr3:116049093..116051195,2	MCF-7	breast:
11	chr3:116071165..116074760-chr3:116075305..116079110,5	K562	blood:
12	chr3:116023706..116025318-chr3:116027363..116029556,2	MCF-7	breast:
13	chr3:116023706..116025318-chr3:116027363..116029556,2	MCF-7	breast:
14	chr3:116038102..116041332-chr3:116053256..116055932,3	K562	blood:
15	chr3:115858694..115859203-chr3:116105156..116105712,2	MCF-7	breast:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GAP43-13	chr3:116018476-116019815	NONHSAT091309
2	lnc-ZBTB20-5	chr3:116058164-116058456	uc_121_-
3	lnc-GAP43-15	chr3:116094581-116094795	uc_122_+
4	lnc-GAP43-4	chr3:116086990-116087118	NR_109998
5	lnc-GAP43-14	chr3:116058164-116058456	uc_121_+
6	lnc-GAP43-4	chr3:116078871-116078940	ENSG00000240922.1
7	lnc-GAP43-4	chr3:116086789-116086882	ENSG00000240922.1
8	lnc-GAP43-4	chr3:116086789-116086882	NR_109998
9	lnc-GAP43-4	chr3:116088678-116088932	NR_109998
10	lnc-GAP43-4	chr3:116086990-116087118	ENSG00000240922.1
11	lnc-GAP43-4	chr3:116088678-116088937	ENSG00000240922.1
12	lnc-GAP43-4	chr3:116078871-116078940	NR_109998
13	lnc-ZBTB20-6	chr3:116094581-116094795	uc_122_-

No data

Variant related genes	Relation type
LSAMP-AS1	TF binding region
LSAMP-AS1	CpG island
ENSG00000240922	chromatin interactions

Extended variants
information (count: 3996 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:3996 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386664884	chr3:116017931-116017932	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs78256772	chr3:116017933-116017934	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs566572104	chr3:116017987-116017988	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs188875525	chr3:116017995-116017996	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs371474111	chr3:116018014-116018015	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs543699198	chr3:116018058-116018059	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs558598548	chr3:116018102-116018103	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs181618713	chr3:116018132-116018133	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs74470709	chr3:116018136-116018137	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs113559767	chr3:116018141-116018142	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs575137517	chr3:116018149-116018150	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs542414899	chr3:116018244-116018245	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs554109908	chr3:116018268-116018269	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs6785857	chr3:116018275-116018276	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs60772251	chr3:116018290-116018291	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs564227866	chr3:116018318-116018319	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs113859112	chr3:116018331-116018332	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs35538266	chr3:116018361-116018362	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs546407573	chr3:116018374-116018375	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs140047450	chr3:116018385-116018386	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs190370931	chr3:116018399-116018400	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs75947092	chr3:116018401-116018402	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs76578754	chr3:116018450-116018451	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs145686553	chr3:116018508-116018509	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
25	rs552001633	chr3:116018592-116018593	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
26	rs116892365	chr3:116018624-116018625	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
27	rs55893774	chr3:116018631-116018632	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs182493218	chr3:116018632-116018633	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
29	rs568052052	chr3:116018663-116018664	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs375395108	chr3:116018687-116018688	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs149062590	chr3:116018713-116018714	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
32	rs367770933	chr3:116018714-116018715	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
33	rs201828609	chr3:116018716-116018717	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
34	rs369114530	chr3:116018718-116018719	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
35	rs148959113	chr3:116018740-116018741	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
36	rs554427566	chr3:116018755-116018756	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
37	rs80019305	chr3:116018759-116018760	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
38	rs142859860	chr3:116018812-116018813	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
39	rs35522204	chr3:116018813-116018814	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
40	rs537786216	chr3:116018831-116018832	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
41	rs78585409	chr3:116018862-116018863	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
42	rs543421767	chr3:116018863-116018864	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
43	rs561788237	chr3:116018903-116018904	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
44	rs370872924	chr3:116018974-116018975	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
45	rs541791425	chr3:116019114-116019115	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs151204897	chr3:116019125-116019126	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs560359175	chr3:116019169-116019170	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs527516304	chr3:116019187-116019188	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs185886514	chr3:116019196-116019197	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs191122268	chr3:116019207-116019208	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Developmental delay	22180640	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Attention deficit hyperactivity disorder	22180640	CNVD
Ovarian cancer	22174824	CNVD
Myelofibrosis	22110671	CNVD
Characteristic facial feature	22180640	CNVD
hypoplastic male genitals	22180640	CNVD
postnatal overgrowth	22180640	CNVD
Schizophrenia	23813976	CNVD
lymphocytic leukemia	21291569	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:642 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116009000-116018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:116009200-116018200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:116014800-116018000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:116014800-116018000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:116015000-116018000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:116015400-116020800	Weak transcription	Fetal Lung	lung
7	chr3:116016800-116018400	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:116016800-116018600	Enhancers	Brain Angular Gyrus	brain
9	chr3:116016800-116019600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:116017000-116029600	Enhancers	Colon Smooth Muscle	Colon
11	chr3:116017200-116018200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:116017200-116020800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:116017400-116019400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:116017600-116019000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:116017800-116018200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:116017800-116018400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:116017800-116018600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr3:116017800-116018600	Enhancers	Fetal Brain Male	brain
19	chr3:116017800-116019000	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr3:116017800-116019200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:116017800-116019400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:116017800-116019400	Enhancers	Brain Substantia Nigra	brain
23	chr3:116017800-116019400	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:116017800-116019600	Enhancers	Brain Anterior Caudate	brain
25	chr3:116018000-116018600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:116018000-116019200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr3:116018000-116019200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr3:116018000-116019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:116018000-116019400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:116018000-116019400	Enhancers	Fetal Stomach	stomach
31	chr3:116018000-116019600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:116018200-116018600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr3:116018200-116019000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:116018200-116019000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:116018200-116019000	Enhancers	Fetal Brain Female	brain
36	chr3:116018200-116021400	Enhancers	Brain Germinal Matrix	brain
37	chr3:116018400-116018600	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr3:116018600-116018800	Enhancers	Brain Cingulate Gyrus	brain
39	chr3:116018600-116019000	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr3:116018600-116019000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr3:116018600-116019000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:116018600-116019000	Flanking Active TSS	Fetal Brain Male	brain
43	chr3:116018600-116019200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr3:116018600-116019200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:116018600-116019600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:116018600-116019800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:116018600-116020400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:116018800-116019000	Flanking Active TSS	Brain Cingulate Gyrus	brain
49	chr3:116019000-116019200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr3:116019000-116019200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links