Variant report

Variant	rs541791425
Chromosome Location	chr3:116019114-116019115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GAP43-13	chr3:116018476-116019815	NONHSAT091309

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116015400-116020800	Weak transcription	Fetal Lung	lung
2	chr3:116016800-116019600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:116017000-116029600	Enhancers	Colon Smooth Muscle	Colon
4	chr3:116017200-116020800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:116017400-116019400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:116017800-116019200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:116017800-116019400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:116017800-116019400	Enhancers	Brain Substantia Nigra	brain
9	chr3:116017800-116019400	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:116017800-116019600	Enhancers	Brain Anterior Caudate	brain
11	chr3:116018000-116019200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:116018000-116019200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:116018000-116019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:116018000-116019400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:116018000-116019400	Enhancers	Fetal Stomach	stomach
16	chr3:116018000-116019600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:116018200-116021400	Enhancers	Brain Germinal Matrix	brain
18	chr3:116018600-116019200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:116018600-116019200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:116018600-116019600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:116018600-116019800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:116018600-116020400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:116019000-116019200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr3:116019000-116019200	Enhancers	Fetal Brain Male	brain
25	chr3:116019000-116019400	Enhancers	Brain Angular Gyrus	brain
26	chr3:116019000-116019400	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:116019000-116019400	Enhancers	Brain Hippocampus Middle	brain
28	chr3:116019000-116019600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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