Variant report

Variant	nsv877533
Chromosome Location	chr3:136539689-136662954
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1499)
CpG islands
(count:1464)
Chromatin interactive
region (count:107)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1499 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:136580940-136581709	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:136586175-136586445	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:136649588-136649739	K562	blood:	n/a	n/a
4	ARID3A	chr3:136554996-136555038	K562	blood:	n/a	n/a
5	ARID3A	chr3:136557683-136558219	K562	blood:	n/a	n/a
6	ARID3A	chr3:136580608-136581236	K562	blood:	n/a	n/a
7	ARID3A	chr3:136559106-136559425	K562	blood:	n/a	n/a
8	ARID3A	chr3:136618377-136619044	K562	blood:	n/a	n/a
9	ATF1	chr3:136559082-136559397	K562	blood:	n/a	n/a
10	ATF1	chr3:136635180-136635380	K562	blood:	n/a	n/a
11	ATF1	chr3:136580797-136581332	K562	blood:	n/a	n/a
12	ATF1	chr3:136601470-136601780	K562	blood:	n/a	n/a
13	ATF1	chr3:136618450-136618980	K562	blood:	n/a	n/a
14	ATF2	chr3:136580227-136582000	GM12878	blood:	n/a	n/a
15	ATF3	chr3:136557787-136558073	K562	blood:	n/a	n/a
16	BACH1	chr3:136557790-136558314	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr3:136580786-136581788	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr3:136557525-136558265	K562	blood:	n/a	n/a
19	BATF	chr3:136638684-136638851	GM12878	blood:	n/a	n/a
20	BATF	chr3:136616380-136616562	GM12878	blood:	n/a	n/a
21	BATF	chr3:136644286-136644529	GM12878	blood:	n/a	n/a
22	BCL11A	chr3:136638722-136638924	GM12878	blood:	n/a	chr3:136638764-136638771
23	BCL3	chr3:136580579-136581295	A549	lung:	n/a	chr3:136581083-136581096 chr3:136581087-136581096 chr3:136581090-136581099 chr3:136581084-136581093 chr3:136581079-136581092
24	BCLAF1	chr3:136580389-136581423	GM12878	blood:	n/a	chr3:136581348-136581357 chr3:136581083-136581096 chr3:136581087-136581096 chr3:136581090-136581099 chr3:136581084-136581093 chr3:136581079-136581092
25	BCLAF1	chr3:136651385-136651753	GM12878	blood:	n/a	n/a
26	BCLAF1	chr3:136581463-136581950	GM12878	blood:	n/a	n/a
27	BCLAF1	chr3:136580520-136581427	GM12878	blood:	n/a	chr3:136581348-136581357 chr3:136581083-136581096 chr3:136581087-136581096 chr3:136581090-136581099 chr3:136581084-136581093 chr3:136581079-136581092
28	BHLHE40	chr3:136618455-136618770	K562	blood:	n/a	n/a
29	BHLHE40	chr3:136559068-136559308	K562	blood:	n/a	n/a
30	BHLHE40	chr3:136580453-136581815	GM12878	blood:	n/a	chr3:136581480-136581496
31	BHLHE40	chr3:136580853-136582133	HepG2	liver:	n/a	chr3:136581480-136581496
32	BHLHE40	chr3:136580509-136581913	K562	blood:	n/a	chr3:136581480-136581496
33	BRCA1	chr3:136581143-136581651	H1-hESC	embryonic stem cell:	n/a	n/a
34	BRCA1	chr3:136581578-136581673	GM12878	blood:	n/a	n/a
35	BRCA1	chr3:136580980-136581671	HepG2	liver:	n/a	n/a
36	BRCA1	chr3:136602624-136602654	Hela-S3	cervix:	n/a	n/a
37	BRCA1	chr3:136580537-136582484	Hela-S3	cervix:	n/a	n/a
38	BRCA1	chr3:136580657-136581278	GM12878	blood:	n/a	n/a
39	CBX3	chr3:136623596-136623872	K562	blood:	n/a	n/a
40	CBX3	chr3:136559054-136559412	K562	blood:	n/a	n/a
41	CBX3	chr3:136580320-136581375	K562	blood:	n/a	n/a
42	CBX3	chr3:136581508-136581784	K562	blood:	n/a	n/a
43	CCNT2	chr3:136650119-136650229	K562	blood:	n/a	n/a
44	CCNT2	chr3:136580690-136581751	K562	blood:	n/a	chr3:136581699-136581708
45	CCNT2	chr3:136618324-136618871	K562	blood:	n/a	n/a
46	CCNT2	chr3:136559079-136559353	K562	blood:	n/a	n/a
47	CEBPB	chr3:136566766-136566859	A549	lung:	n/a	chr3:136566769-136566780
48	CEBPB	chr3:136651334-136651671	A549	lung:	n/a	n/a
49	CEBPB	chr3:136586478-136586752	HepG2	liver:	n/a	n/a
50	CEBPB	chr3:136648848-136649115	MCF-7	breast:	n/a	n/a

(count:1464 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:136580965-136581015	H1-hESC	embryonic stem cell:	embryo
2	chr3:136581777-136581827	SKMC	muscle:	n/a
3	chr3:136580959-136581009	BJ	skin:	n/a
4	chr3:136581035-136581085	SK-N-MC	brain:	n/a
5	chr3:136612288-136612338	SK-N-SH_RA	brain:	n/a
6	chr3:136581777-136581827	HRPEpiC	eye:	n/a
7	chr3:136660121-136660171	PrEC	prostate:	n/a
8	chr3:136580959-136581009	HCT-116	colon:	n/a
9	chr3:136581189-136581239	AG09309	skin:	n/a
10	chr3:136581033-136581083	Jurkat	blood:	n/a
11	chr3:136609080-136609130	SAEC	small airway:	n/a
12	chr3:136556829-136556879	HEK293	kidney:	embryo
13	chr3:136609080-136609130	AG04449	skin:	fetal
14	chr3:136609080-136609130	U87	brain:	n/a
15	chr3:136579741-136579791	H1-hESC	embryonic stem cell:	embryo
16	chr3:136609157-136609207	HCM	heart:	n/a
17	chr3:136608958-136609008	PrEC	prostate:	n/a
18	chr3:136581777-136581827	AG10803	skin:	n/a
19	chr3:136580287-136580337	AG09309	skin:	n/a
20	chr3:136573684-136573734	NH-A	brain:	n/a
21	chr3:136601982-136602032	PrEC	prostate:	n/a
22	chr3:136581031-136581081	AoSMC	blood vessel:	n/a
23	chr3:136581031-136581081	HIPEpiC	eye:	n/a
24	chr3:136580287-136580337	LNCaP	prostate:	n/a
25	chr3:136578209-136578259	GM19239	blood:	n/a
26	chr3:136618442-136618492	SK-N-MC	brain:	n/a
27	chr3:136609157-136609207	K562	blood:	n/a
28	chr3:136601982-136602032	HPAEpiC	pulmonary alveolar:	n/a
29	chr3:136618442-136618492	AG09319	gingival:	n/a
30	chr3:136581720-136581770	NHBE	bronchial:	n/a
31	chr3:136649333-136649383	ovcar-3	ovarian:	n/a
32	chr3:136578209-136578259	A549	lung:	n/a
33	chr3:136609080-136609130	ovcar-3	ovarian:	n/a
34	chr3:136608958-136609008	GM19239	blood:	n/a
35	chr3:136580769-136580819	PrEC	prostate:	n/a
36	chr3:136581777-136581827	SAEC	small airway:	n/a
37	chr3:136580965-136581015	GM12891	blood:	n/a
38	chr3:136579741-136579791	T-47D	breast:	n/a
39	chr3:136649333-136649383	HIPEpiC	eye:	n/a
40	chr3:136618442-136618492	HCM	heart:	n/a
41	chr3:136580965-136581015	GM19239	blood:	n/a
42	chr3:136660121-136660171	NHDF-neo	bronchial:	n/a
43	chr3:136556829-136556879	Caco-2	colon:	n/a
44	chr3:136581189-136581239	NHDF-neo	bronchial:	n/a
45	chr3:136578209-136578259	HNPCEpiC	eye:	n/a
46	chr3:136608208-136608258	GM06990	blood:	n/a
47	chr3:136612288-136612338	ECC-1	luminal epithelium:	n/a
48	chr3:136609157-136609207	RPTEC	kidney:	n/a
49	chr3:136556829-136556879	HUVEC	blood vessel:	n/a
50	chr3:136649333-136649383	NH-A	brain:	n/a

(count:107 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr3:136579717..136582234-chr3:136620305..136621833,2	MCF-7	breast:
2	chr3:136660317..136661826-chr3:136665286..136667612,2	K562	blood:
3	chr3:136591585..136593473-chr3:136601721..136603894,2	MCF-7	breast:
4	chr3:136658510..136660043-chr3:136661343..136664014,2	MCF-7	breast:
5	chr3:136556513..136558493-chr3:136581161..136583381,2	K562	blood:
6	chr1:51983714..51984668-chr3:136580705..136581230,2	Hela-S3	cervix:
7	chr3:136656593..136659304-chr3:136661529..136663519,2	MCF-7	breast:
8	chr3:136641584..136644084-chr3:136646429..136649254,2	MCF-7	breast:
9	chr11:118965747..118966339-chr3:136580483..136581270,2	Hela-S3	cervix:
10	chr3:136580660..136583127-chr3:136589385..136592191,4	K562	blood:
11	chr3:136580294..136582627-chr3:136593380..136595725,2	MCF-7	breast:
12	chr3:136581094..136582950-chr3:136617390..136620227,2	MCF-7	breast:
13	chr3:136581625..136583340-chr3:136586499..136589172,2	K562	blood:
14	chr3:136637702..136640627-chr3:136641838..136645550,3	MCF-7	breast:
15	chr3:136559234..136561266-chr3:136568039..136570871,2	K562	blood:
16	chr3:136568386..136570970-chr3:136579432..136581354,2	K562	blood:
17	chr3:136580535..136582500-chr3:136588288..136592198,4	K562	blood:
18	chr3:136581625..136583340-chr3:136586499..136589172,2	K562	blood:
19	chr3:136580474..136583340-chr3:136584375..136587999,4	K562	blood:
20	chr3:136655622..136657688-chr3:136659902..136662004,2	MCF-7	breast:
21	chr3:136636446..136639325-chr3:136639955..136642368,3	K562	blood:
22	chr3:136637702..136640627-chr3:136641838..136645550,3	MCF-7	breast:
23	chr3:136579482..136582272-chr3:136609445..136613552,4	MCF-7	breast:
24	chr3:136471389..136473293-chr3:136580852..136582413,2	MCF-7	breast:
25	chr3:136548915..136551546-chr3:136552798..136555438,3	K562	blood:
26	chr3:136657952..136660440-chr3:136666983..136671053,4	MCF-7	breast:
27	chr3:136536665..136539935-chr3:136579370..136582081,3	K562	blood:
28	chr3:136568394..136571514-chr3:136574804..136577535,3	K562	blood:
29	chr3:136554235..136556505-chr3:136559214..136561778,2	K562	blood:
30	chr3:136655622..136657688-chr3:136659902..136662004,2	MCF-7	breast:
31	chr3:136633616..136635722-chr3:136639383..136641177,2	MCF-7	breast:
32	chr11:62608645..62609483-chr3:136581135..136581937,2	Hela-S3	cervix:
33	chr3:136583020..136585823-chr3:136647471..136649175,2	MCF-7	breast:
34	chr3:136554235..136556505-chr3:136559214..136561778,2	K562	blood:
35	chr3:136580082..136581916-chr3:136650239..136652084,2	MCF-7	breast:
36	chr1:93347932..93348855-chr3:136601084..136601683,2	NB4	blood:
37	chr3:136557267..136559403-chr3:136563410..136566256,3	K562	blood:
38	chr3:136537560..136539935-chr3:136579290..136582081,4	K562	blood:
39	chr1:206858173..206858828-chr3:136580964..136581648,2	Hela-S3	cervix:
40	chr20:2450893..2451640-chr3:136580454..136581436,2	Hela-S3	cervix:
41	chr3:136540164..136541710-chr3:136544564..136546317,2	K562	blood:
42	chr3:136604140..136607087-chr3:136614887..136617471,2	K562	blood:
43	chr3:136649399..136652137-chr3:136652248..136655510,3	MCF-7	breast:
44	chr3:136649399..136652137-chr3:136652248..136655510,3	MCF-7	breast:
45	chr3:136597721..136599414-chr3:136607033..136609685,2	MCF-7	breast:
46	chr3:136598088..136600803-chr3:136614859..136618063,3	MCF-7	breast:
47	chr3:136573010..136575502-chr3:136579664..136581454,2	MCF-7	breast:
48	chr3:136570595..136572217-chr3:136572560..136574490,2	MCF-7	breast:
49	chr12:66563320..66563841-chr3:136557779..136558286,2	MCF-7	breast:
50	chr3:135915450..135917077-chr3:136578286..136581089,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAG1-1	chr3:136565370-136565428	NR_110177
2	lnc-STAG1-1	chr3:136580589-136580905	NR_110175
3	lnc-STAG1-1	chr3:136560568-136561411	ENSG00000239213.1
4	lnc-STAG1-1	chr3:136561033-136561411	ENSG00000239213.1
5	lnc-STAG1-1	chr3:136561299-136561411	ENSG00000239213.1
6	lnc-STAG1-1	chr3:136565370-136565428	NR_110176
7	lnc-STAG1-1	chr3:136560818-136561411	NR_110177
8	lnc-STAG1-1	chr3:136580589-136580891	ENSG00000239213.1
9	lnc-STAG1-1	chr3:136580457-136580896	ENSG00000239213.1
10	lnc-STAG1-1	chr3:136576895-136577445	NONHSAT092291
11	lnc-STAG1-1	chr3:136580589-136580854	NONHSAT092291
12	lnc-STAG1-1	chr3:136580589-136580879	ENSG00000239213.1
13	lnc-STAG1-6	chr3:136556180-136557863	ENSG00000273486.1
14	lnc-STAG1-1	chr3:136577360-136577445	ENSG00000239213.1
15	lnc-TMEM22-2	chr3:136561194-136562164	NONHSAT092287
16	lnc-STAG1-1	chr3:136565370-136565428	ENSG00000239213.1
17	lnc-STAG1-1	chr3:136580472-136580901	NONHSAT092292
18	lnc-STAG1-1	chr3:136565370-136565428	NR_110175
19	lnc-STAG1-1	chr3:136565370-136565428	ENSG00000239213.1
20	lnc-STAG1-1	chr3:136577360-136577445	NR_110175
21	lnc-STAG1-1	chr3:136560818-136561411	NR_110176
22	lnc-STAG1-1	chr3:136560818-136561411	NR_110175
23	lnc-STAG1-1	chr3:136580589-136580905	NR_110177
24	lnc-STAG1-1	chr3:136565370-136565428	ENSG00000239213.1
25	lnc-STAG1-1	chr3:136580457-136580905	NR_110176

No data

Variant related genes	Relation type
ENSG00000239213	TF binding region
IL20RB	TF binding region
ENSG00000273486	TF binding region
ENSG00000214283	TF binding region
NCK1	TF binding region
ENSG00000239213	CpG island
IL20RB	CpG island
ENSG00000273486	CpG island
ENSG00000214283	CpG island
NCK1	CpG island
ENSG00000155957	chromatin interactions
ENSG00000072682	chromatin interactions
ENSG00000239213	chromatin interactions
ENSG00000227070	chromatin interactions
ENSG00000198722	chromatin interactions
ENSG00000273486	chromatin interactions
ENSG00000214283	chromatin interactions
ENSG00000174579	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000168917	chromatin interactions
ENSG00000261758	chromatin interactions
ENSG00000174564	chromatin interactions
ENSG00000162889	chromatin interactions
ENSG00000188486	chromatin interactions
ENSG00000158092	chromatin interactions
ENSG00000118007	chromatin interactions
ENSG00000200463	chromatin interactions
ENSG00000163162	chromatin interactions
ENSG00000125835	chromatin interactions

Extended variants
information (count: 4482 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:4482 , 50 per page) page: 1 2 3 4 5 6 7 ... 90

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9682783	chr3:136539689-136539690	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs9682106	chr3:136539699-136539700	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs576495167	chr3:136539736-136539737	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs540009502	chr3:136539744-136539745	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs146780222	chr3:136539815-136539816	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs200992495	chr3:136539836-136539837	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs77387110	chr3:136539837-136539838	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs72593604	chr3:136539838-136539839	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs10661938	chr3:136539839-136539840	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs527402309	chr3:136539882-136539883	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs138055665	chr3:136539926-136539927	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs546853485	chr3:136539934-136539935	Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs527984750	chr3:136539969-136539970	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs553168267	chr3:136539975-136539976	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs374755836	chr3:136540027-136540028	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs561577125	chr3:136540051-136540052	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs11373862	chr3:136540080-136540081	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs397772198	chr3:136540081-136540082	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs114140553	chr3:136540090-136540091	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs549771070	chr3:136540193-136540194	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs201797887	chr3:136540199-136540200	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs192802514	chr3:136540204-136540205	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs538760947	chr3:136540281-136540282	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs529560504	chr3:136540291-136540292	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs552065064	chr3:136540297-136540298	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs565588426	chr3:136540299-136540300	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs534597596	chr3:136540301-136540302	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs76402952	chr3:136540307-136540308	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs149048170	chr3:136540313-136540314	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs184855944	chr3:136540338-136540339	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs145875387	chr3:136540349-136540350	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs138630715	chr3:136540374-136540375	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs566799035	chr3:136540383-136540384	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs113882645	chr3:136540407-136540408	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs545528299	chr3:136540428-136540429	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs565468125	chr3:136540450-136540451	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs572631499	chr3:136540463-136540464	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs7614422	chr3:136540529-136540530	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs561536297	chr3:136540531-136540532	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs530440720	chr3:136540543-136540544	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs535748931	chr3:136540596-136540597	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs374835816	chr3:136540597-136540598	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs142707389	chr3:136540635-136540636	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs532105495	chr3:136540698-136540699	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs551896357	chr3:136540734-136540735	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs528638508	chr3:136540762-136540763	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565450853	chr3:136540768-136540769	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs368569540	chr3:136540793-136540794	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs546821293	chr3:136540795-136540796	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs372331559	chr3:136540800-136540801	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Intracranial aneurysm	16715129	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	18511947	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3859 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136537400-136539800	Active TSS	A549	lung
2	chr3:136538200-136539800	Flanking Active TSS	Dnd41	blood
3	chr3:136539200-136539800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:136539400-136539800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:136539400-136539800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr3:136539400-136539800	Weak transcription	K562	blood
7	chr3:136539400-136540400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:136539400-136540400	Weak transcription	Left Ventricle	heart
9	chr3:136539400-136540400	Weak transcription	Pancreas	Pancrea
10	chr3:136539400-136540400	Weak transcription	Spleen	Spleen
11	chr3:136539400-136541800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:136539400-136542600	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:136539400-136542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:136539400-136543800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:136539400-136547000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:136539600-136539800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
17	chr3:136539600-136539800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:136539600-136539800	Enhancers	Brain Anterior Caudate	brain
19	chr3:136539600-136539800	Enhancers	Hela-S3	cervix
20	chr3:136539600-136539800	Enhancers	HUVEC	blood vessel
21	chr3:136539600-136540000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:136539600-136540200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:136539600-136540200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:136539600-136540400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:136539600-136540600	Weak transcription	Adipose Nuclei	Adipose
26	chr3:136539600-136540600	Enhancers	HepG2	liver
27	chr3:136539600-136542200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:136539600-136542800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:136539800-136540400	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr3:136539800-136540600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:136539800-136540800	Enhancers	Dnd41	blood
32	chr3:136539800-136541400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:136539800-136553600	Weak transcription	Hela-S3	cervix
34	chr3:136540200-136540400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:136540200-136541600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:136540400-136540600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:136540400-136540600	Enhancers	Left Ventricle	heart
38	chr3:136540400-136540600	Enhancers	Lung	lung
39	chr3:136540400-136540600	Enhancers	Pancreas	Pancrea
40	chr3:136540400-136540600	Enhancers	Spleen	Spleen
41	chr3:136540400-136544600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:136540600-136540800	Enhancers	Adipose Nuclei	Adipose
43	chr3:136540600-136541600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:136540800-136555200	Weak transcription	Dnd41	blood
45	chr3:136541400-136541800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:136541600-136541800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:136543800-136544000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr3:136544000-136553400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:136544000-136554600	Weak transcription	Psoas Muscle	Psoas
50	chr3:136544600-136546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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