Variant report

Variant	rs566799035
Chromosome Location	chr3:136540383-136540384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136468701..136475672-chr3:136535815..136540749,9	K562	blood:
2	chr3:136540164..136541710-chr3:136544564..136546317,2	K562	blood:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136539400-136540400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:136539400-136540400	Weak transcription	Left Ventricle	heart
3	chr3:136539400-136540400	Weak transcription	Pancreas	Pancrea
4	chr3:136539400-136540400	Weak transcription	Spleen	Spleen
5	chr3:136539400-136541800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:136539400-136542600	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:136539400-136542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:136539400-136543800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:136539400-136547000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:136539600-136540400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:136539600-136540600	Weak transcription	Adipose Nuclei	Adipose
12	chr3:136539600-136540600	Enhancers	HepG2	liver
13	chr3:136539600-136542200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:136539600-136542800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:136539800-136540400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr3:136539800-136540600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:136539800-136540800	Enhancers	Dnd41	blood
18	chr3:136539800-136541400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:136539800-136553600	Weak transcription	Hela-S3	cervix
20	chr3:136540200-136540400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:136540200-136541600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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