No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
1 |
rs6583309 |
chr3:196158773-196158774 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|
2 |
rs141512433 |
chr3:196158839-196158840 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
3 |
rs540258516 |
chr3:196158865-196158866 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
4 |
rs112015335 |
chr3:196158906-196158907 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
5 |
rs374232661 |
chr3:196158909-196158910 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
6 |
rs559205757 |
chr3:196158914-196158915 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
7 |
rs199993348 |
chr3:196158951-196158952 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
8 |
rs544800620 |
chr3:196158956-196158957 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
9 |
rs563147780 |
chr3:196158968-196158969 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
10 |
rs142809568 |
chr3:196158973-196158974 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
11 |
rs548822685 |
chr3:196158977-196158978 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
12 |
rs375758398 |
chr3:196159011-196159012 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
13 |
rs567227413 |
chr3:196159012-196159013 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
14 |
rs528055834 |
chr3:196159016-196159017 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
15 |
rs546654676 |
chr3:196159080-196159081 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
16 |
rs571965113 |
chr3:196159118-196159119 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
17 |
rs539340601 |
chr3:196159132-196159133 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
18 |
rs551152446 |
chr3:196159156-196159157 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
19 |
rs201109613 |
chr3:196159171-196159172 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
20 |
rs367802560 |
chr3:196159188-196159189 |
Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
21 |
rs371602504 |
chr3:196159229-196159230 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
22 |
rs199874408 |
chr3:196159234-196159235 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
23 |
rs151210738 |
chr3:196159235-196159236 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
24 |
rs202062701 |
chr3:196159261-196159262 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
Chromatin interactive regionlncRNA
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
25 |
rs549119450 |
chr3:196159274-196159275 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
26 |
rs368882434 |
chr3:196159275-196159276 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
27 |
rs373161636 |
chr3:196159279-196159280 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
28 |
rs376344889 |
chr3:196159319-196159320 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
29 |
rs148097302 |
chr3:196159338-196159339 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
30 |
rs577467941 |
chr3:196159342-196159343 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
31 |
rs544912645 |
chr3:196159369-196159370 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
32 |
rs563463912 |
chr3:196159389-196159390 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
33 |
rs575372683 |
chr3:196159395-196159396 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
34 |
rs542838400 |
chr3:196159409-196159410 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
35 |
rs560807620 |
chr3:196159417-196159418 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
36 |
rs561023448 |
chr3:196159424-196159425 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
37 |
rs546570546 |
chr3:196159429-196159430 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
38 |
rs564881374 |
chr3:196159438-196159439 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
39 |
rs532818919 |
chr3:196159457-196159458 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
40 |
rs551316536 |
chr3:196159464-196159465 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
41 |
rs185547401 |
chr3:196159515-196159516 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
42 |
rs536430163 |
chr3:196159522-196159523 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
43 |
rs548803884 |
chr3:196159541-196159542 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
44 |
rs566849747 |
chr3:196159554-196159555 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription
|
TF binding regionChromatin interactive regionlncRNA
|
11 gene(s)
|
Overlapped CNVs
|
n/a
|
45 |
rs146284040 |
chr3:196159669-196159670 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
46 |
rs534031403 |
chr3:196159699-196159700 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
47 |
rs192050779 |
chr3:196159726-196159727 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
48 |
rs183421285 |
chr3:196159742-196159743 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
49 |
rs367578913 |
chr3:196159749-196159750 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
50 |
rs368530834 |
chr3:196159755-196159756 |
Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|