Variant report

Variant	rs546654676
Chromosome Location	chr3:196159080-196159081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:196141592..196145403-chr3:196157124..196159775,4	MCF-7	breast:
2	chr3:196062778..196068235-chr3:196157235..196160927,9	K562	blood:
3	chr3:196043550..196045099-chr3:196157832..196159641,2	MCF-7	breast:
4	chr3:196062836..196066201-chr3:196157853..196162484,6	K562	blood:
5	chr3:196014592..196016192-chr3:196157861..196160786,2	MCF-7	breast:
6	chr3:196141252..196144269-chr3:196156132..196159326,3	K562	blood:
7	chr3:196146851..196150238-chr3:196157711..196160603,3	MCF-7	breast:
8	chr3:196156342..196159977-chr3:196227568..196231019,3	MCF-7	breast:
9	chr3:196068323..196070202-chr3:196157580..196160834,5	MCF-7	breast:
10	chr3:196014434..196017243-chr3:196157002..196159307,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO45-2	chr3:196159073-196159401	ENSG00000225822.2
2	lnc-FBXO45-2	chr3:196158235-196160242	ENSG00000225822.3

No data

Variant related genes	Relation type
ENSG00000273331	Chromatin interaction
ENSG00000226345	Chromatin interaction
ENSG00000161217	Chromatin interaction
ENSG00000272741	Chromatin interaction
ENSG00000145107	Chromatin interaction
ENSG00000213123	Chromatin interaction
ENSG00000163960	Chromatin interaction
ENSG00000212146	Chromatin interaction
ENSG00000163961	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1003550	chr3:195885340-196159824	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv536893	chr3:195885340-196159824	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
4	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv878182	chr3:195974181-196228360	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1003764	chr3:196028141-196190687	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv536895	chr3:196028141-196190687	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	esv1844755	chr3:196057616-196190350	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv469831	chr3:196071603-196235225	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv482542	chr3:196071603-196235225	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv878183	chr3:196072442-196181228	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1003066	chr3:196098763-196414159	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv2752687	chr3:196147690-196286690	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
15	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
16	nsv878184	chr3:196158773-196191434	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv878185	chr3:196158773-196199204	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv878186	chr3:196158773-196219794	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196156800-196160400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr3:196156800-196160600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr3:196157000-196160000	Active TSS	GM12878-XiMat	blood
4	chr3:196157000-196160200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:196157200-196160000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:196157200-196160200	Active TSS	NHLF	lung
7	chr3:196157400-196160200	Active TSS	NHDF-Ad	bronchial
8	chr3:196157400-196160600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr3:196157600-196159600	Active TSS	K562	blood
10	chr3:196157600-196159800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:196157600-196159800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr3:196157600-196160200	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr3:196157600-196160200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:196157600-196160200	Active TSS	Brain Anterior Caudate	brain
15	chr3:196157600-196160200	Active TSS	Fetal Intestine Small	intestine
16	chr3:196157600-196160200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr3:196157600-196160400	Active TSS	H1 Cell Line	embryonic stem cell
18	chr3:196157600-196160400	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:196157600-196160400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:196157600-196160400	Active TSS	Brain Angular Gyrus	brain
21	chr3:196157600-196160400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:196157600-196160400	Active TSS	Fetal Intestine Large	intestine
23	chr3:196157600-196160400	Active TSS	Right Atrium	heart
24	chr3:196157600-196160400	Active TSS	Stomach Smooth Muscle	stomach
25	chr3:196157600-196160400	Active TSS	HSMM	muscle
26	chr3:196157600-196160600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:196157600-196160600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:196157800-196159600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr3:196157800-196159800	Active TSS	Fetal Muscle Leg	muscle
30	chr3:196157800-196159800	Active TSS	Fetal Thymus	thymus
31	chr3:196157800-196160200	Active TSS	H9 Cell Line	embryonic stem cell
32	chr3:196157800-196160200	Active TSS	Brain Hippocampus Middle	brain
33	chr3:196157800-196160200	Active TSS	Colon Smooth Muscle	Colon
34	chr3:196157800-196160200	Active TSS	Fetal Stomach	stomach
35	chr3:196157800-196160200	Active TSS	Ovary	ovary
36	chr3:196157800-196160400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:196157800-196160400	Active TSS	A549	lung
38	chr3:196157800-196160600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:196157800-196160600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:196158000-196159400	Active TSS	Primary T cells fromperipheralblood	blood
41	chr3:196158000-196159600	Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr3:196158000-196159600	Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr3:196158000-196159600	Active TSS	Placenta	Placenta
44	chr3:196158000-196159800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:196158000-196160000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:196158000-196160000	Active TSS	Fetal Muscle Trunk	muscle
47	chr3:196158000-196160000	Active TSS	Left Ventricle	heart
48	chr3:196158000-196160000	Active TSS	Placenta Amnion	Placenta Amnion
49	chr3:196158000-196160000	Active TSS	Psoas Muscle	Psoas
50	chr3:196158000-196160200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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