Variant report

Variant	nsv879076
Chromosome Location	chr4:62251077-62354791
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:62328397-62328752	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:62309525-62309766	HepG2	liver:	n/a	n/a
3	BACH1	chr4:62333799-62333999	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr4:62328613-62328644	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr4:62328148-62328341	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr4:62261133-62261141	H1-hESC	embryonic stem cell:	n/a	n/a
7	BRCA1	chr4:62328229-62328683	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr4:62328170-62328871	A549	lung:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
9	CEBPB	chr4:62262853-62263184	IMR90	lung:	n/a	chr4:62262997-62263008
10	CEBPB	chr4:62276180-62276412	A549	lung:	n/a	chr4:62276236-62276247
11	CEBPB	chr4:62323608-62323802	A549	lung:	n/a	chr4:62323728-62323739 chr4:62323727-62323740
12	CEBPB	chr4:62333825-62334130	HepG2	liver:	n/a	n/a
13	CEBPB	chr4:62262868-62263124	H1-hESC	embryonic stem cell:	n/a	chr4:62262997-62263008
14	CEBPB	chr4:62327456-62327517	HepG2	liver:	n/a	n/a
15	CEBPB	chr4:62262236-62262494	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr4:62333760-62333999	H1-hESC	embryonic stem cell:	n/a	n/a
17	CEBPB	chr4:62333775-62334143	IMR90	lung:	n/a	n/a
18	CEBPB	chr4:62350575-62350948	IMR90	lung:	n/a	chr4:62350749-62350762 chr4:62350749-62350760
19	CEBPB	chr4:62341665-62341906	HepG2	liver:	n/a	chr4:62341802-62341813 chr4:62341804-62341813
20	CEBPB	chr4:62328296-62328586	K562	blood:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
21	CEBPB	chr4:62312650-62313007	ECC-1	luminal epithelium:	n/a	n/a
22	CEBPB	chr4:62350625-62350991	A549	lung:	n/a	chr4:62350749-62350762 chr4:62350749-62350760
23	CEBPB	chr4:62323656-62323793	K562	blood:	n/a	chr4:62323728-62323739 chr4:62323727-62323740
24	CEBPB	chr4:62303375-62303869	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr4:62333780-62334120	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr4:62350577-62350924	HepG2	liver:	n/a	chr4:62350749-62350762 chr4:62350749-62350760
27	CEBPB	chr4:62309519-62310204	Hela-S3	cervix:	n/a	chr4:62310035-62310046
28	CEBPB	chr4:62277088-62277143	HepG2	liver:	n/a	chr4:62277102-62277113
29	CEBPB	chr4:62328389-62328591	HepG2	liver:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
30	CEBPB	chr4:62328306-62328822	HepG2	liver:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
31	CEBPB	chr4:62350663-62351071	Hela-S3	cervix:	n/a	chr4:62350749-62350762 chr4:62350998-62351015 chr4:62350749-62350760
32	CEBPB	chr4:62328293-62328678	A549	lung:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
33	CEBPB	chr4:62328188-62328745	ECC-1	luminal epithelium:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
34	CEBPB	chr4:62328313-62328685	A549	lung:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
35	CEBPB	chr4:62258772-62259055	HepG2	liver:	n/a	chr4:62258908-62258919
36	CEBPB	chr4:62291024-62291370	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr4:62260805-62261084	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPB	chr4:62350601-62350882	H1-hESC	embryonic stem cell:	n/a	chr4:62350749-62350762 chr4:62350749-62350760
39	CEBPB	chr4:62333816-62334086	A549	lung:	n/a	n/a
40	CEBPB	chr4:62276109-62276392	IMR90	lung:	n/a	chr4:62276236-62276247
41	CEBPB	chr4:62328072-62328751	IMR90	lung:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
42	CEBPB	chr4:62328076-62328901	Hela-S3	cervix:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
43	CEBPB	chr4:62258793-62259056	H1-hESC	embryonic stem cell:	n/a	chr4:62258908-62258919
44	CEBPB	chr4:62328085-62328797	ECC-1	luminal epithelium:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
45	CEBPB	chr4:62323597-62323854	HepG2	liver:	n/a	chr4:62323728-62323739 chr4:62323727-62323740
46	CEBPB	chr4:62323601-62323873	IMR90	lung:	n/a	chr4:62323728-62323739 chr4:62323727-62323740
47	CEBPB	chr4:62328345-62328599	H1-hESC	embryonic stem cell:	n/a	chr4:62328457-62328468 chr4:62328456-62328467
48	CEBPB	chr4:62258794-62259026	A549	lung:	n/a	chr4:62258908-62258919
49	CEBPB	chr4:62318701-62319033	HepG2	liver:	n/a	chr4:62318865-62318876
50	CEBPB	chr4:62276088-62276389	HepG2	liver:	n/a	chr4:62276236-62276247

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:62253214-62253264	MCF10A-Er-Src	breast:	n/a
2	chr4:62253214-62253264	HNPCEpiC	eye:	n/a
3	chr4:62253214-62253264	HPAEpiC	pulmonary alveolar:	n/a
4	chr4:62253214-62253264	NT2-D1	testis:	n/a
5	chr4:62253214-62253264	IMR90	lung:	fetal
6	chr4:62253214-62253264	LNCaP	prostate:	n/a
7	chr4:62253214-62253264	SK-N-MC	brain:	n/a
8	chr4:62253214-62253264	T-47D	breast:	n/a
9	chr4:62253214-62253264	HEEpiC	esophagus:	n/a
10	chr4:62253214-62253264	BJ	skin:	n/a
11	chr4:62253214-62253264	ovcar-3	ovarian:	n/a
12	chr4:62253214-62253264	HCF	heart:	n/a
13	chr4:62253214-62253264	HUVEC	blood vessel:	n/a
14	chr4:62253214-62253264	GM12878	blood:	n/a
15	chr4:62253214-62253264	GM12891	blood:	n/a
16	chr4:62253214-62253264	PFSK-1	brain:	n/a
17	chr4:62253214-62253264	HIPEpiC	eye:	n/a
18	chr4:62253214-62253264	PrEC	prostate:	n/a
19	chr4:62253214-62253264	RPTEC	kidney:	n/a
20	chr4:62253214-62253264	K562	blood:	n/a
21	chr4:62253214-62253264	BE2_C	brain:	n/a
22	chr4:62253214-62253264	GM06990	blood:	n/a
23	chr4:62253214-62253264	SAEC	small airway:	n/a
24	chr4:62253214-62253264	MCF-7	breast:	n/a
25	chr4:62253214-62253264	Caco-2	colon:	n/a
26	chr4:62253214-62253264	SK-N-SH_RA	brain:	n/a
27	chr4:62253214-62253264	NH-A	brain:	n/a
28	chr4:62253214-62253264	Hepatocyte	liver:	n/a
29	chr4:62253214-62253264	Hela-S3	cervix:	n/a
30	chr4:62253214-62253264	AoSMC	blood vessel:	n/a
31	chr4:62253214-62253264	HEK293	kidney:	embryo
32	chr4:62253214-62253264	ECC-1	luminal epithelium:	n/a
33	chr4:62253214-62253264	HRPEpiC	eye:	n/a
34	chr4:62253214-62253264	SK-N-SH	brain:	n/a
35	chr4:62253214-62253264	A549	lung:	n/a
36	chr4:62253214-62253264	AG10803	skin:	n/a
37	chr4:62253214-62253264	AG09319	gingival:	n/a
38	chr4:62253214-62253264	HMEC	breast:	n/a
39	chr4:62253214-62253264	AG09309	skin:	n/a
40	chr4:62253214-62253264	HL-60	blood:	n/a
41	chr4:62253214-62253264	GM12892	blood:	n/a
42	chr4:62253214-62253264	GM19239	blood:	n/a
43	chr4:62253214-62253264	CMK	blood:	n/a
44	chr4:62253214-62253264	NB4	blood:	n/a
45	chr4:62253214-62253264	Jurkat	blood:	n/a
46	chr4:62253214-62253264	H1-hESC	embryonic stem cell:	embryo
47	chr4:62253214-62253264	ProgFib	skin:	n/a
48	chr4:62253214-62253264	HCT-116	colon:	n/a
49	chr4:62253214-62253264	U87	brain:	n/a
50	chr4:62253214-62253264	AG04449	skin:	fetal

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:62340392..62342899-chr4:62384568..62386458,2	MCF-7	breast:
2	chr4:62349743..62350606-chr8:100642196..100642782,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR2B-12	chr4:62251129-62251487	NONHSAT096609

Variant related genes	Relation type
ENSG00000205682	TF binding region
ENSG00000205682	CpG island

Extended variants
information (count: 3856 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:3856 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9312076	chr4:62251077-62251078	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs576780192	chr4:62251095-62251096	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534572070	chr4:62251146-62251147	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs552798723	chr4:62251154-62251155	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs72634772	chr4:62251160-62251161	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs373198887	chr4:62251178-62251179	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs56948195	chr4:62251183-62251184	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs377259217	chr4:62251191-62251192	Enhancers Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs575879236	chr4:62251234-62251235	Enhancers Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs563448555	chr4:62251259-62251260	Enhancers Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs575480118	chr4:62251273-62251274	Enhancers Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs548947334	chr4:62251417-62251418	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs545792545	chr4:62251427-62251428	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs143491474	chr4:62251434-62251435	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs534650115	chr4:62251468-62251469	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs547767208	chr4:62251475-62251476	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs559461525	chr4:62251547-62251548	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs530119025	chr4:62251560-62251561	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9684550	chr4:62251577-62251578	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs150962418	chr4:62251599-62251600	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs140981907	chr4:62251627-62251628	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552606998	chr4:62251665-62251666	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571081600	chr4:62251703-62251704	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs144781960	chr4:62251709-62251710	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552997640	chr4:62251721-62251722	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192358096	chr4:62251755-62251756	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535564099	chr4:62251765-62251766	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79460502	chr4:62251979-62251980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs575356373	chr4:62251998-62251999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs545935069	chr4:62252014-62252015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs79973458	chr4:62252020-62252021	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs112944418	chr4:62252075-62252076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs374053240	chr4:62252095-62252096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs111926626	chr4:62252105-62252106	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs573083207	chr4:62252107-62252108	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs541101329	chr4:62252132-62252133	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs553065769	chr4:62252153-62252154	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs559301492	chr4:62252231-62252232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs180735272	chr4:62252237-62252238	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs114180558	chr4:62252250-62252251	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs185181415	chr4:62252297-62252298	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs2342717	chr4:62252306-62252307	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs190047997	chr4:62252381-62252382	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs552736542	chr4:62252422-62252423	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs58345070	chr4:62252425-62252426	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs115377232	chr4:62252509-62252510	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs547283641	chr4:62252521-62252522	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs568076550	chr4:62252544-62252545	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs545058400	chr4:62252576-62252577	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs535398134	chr4:62252636-62252637	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	21922591	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Multiple myeloma	16616336	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Colorectal cancer	16272173	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16573809	CNVD
Osteoporosis	18992858	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	20369283	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Cancer	20164919	CNVD
Lung cancer	20668451	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	22522925	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:514 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62241000-62255600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:62247400-62255400	Weak transcription	Fetal Heart	heart
3	chr4:62247600-62262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:62250400-62251200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:62250400-62251200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:62250400-62252600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:62250400-62252800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:62250400-62252800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:62250600-62251800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:62251000-62251200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:62251000-62251200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:62251000-62251200	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:62251000-62251200	Enhancers	Fetal Muscle Leg	muscle
14	chr4:62251000-62251400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:62251000-62251400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:62251000-62251400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:62251000-62251400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:62251000-62251400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:62251000-62251600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:62251000-62252800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:62251000-62254000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:62251200-62263000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:62251200-62266200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:62251400-62252400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:62251400-62252800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:62251400-62252800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr4:62251400-62253800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:62251400-62255400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:62251600-62253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:62251800-62255400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:62252400-62252600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr4:62252400-62253000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr4:62252600-62253000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr4:62252600-62253800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr4:62252800-62253000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr4:62252800-62253200	Active TSS	H9 Cell Line	embryonic stem cell
37	chr4:62252800-62253200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr4:62252800-62253200	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr4:62252800-62253800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:62253000-62253200	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr4:62253000-62253200	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr4:62253000-62253800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:62253200-62253800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:62253200-62255200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr4:62253200-62255600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr4:62253400-62253600	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr4:62253600-62253800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
48	chr4:62253800-62254000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
49	chr4:62253800-62254200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr4:62253800-62254600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links