Variant report

Variant	rs115377232
Chromosome Location	chr4:62252509-62252510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62241000-62255600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:62247400-62255400	Weak transcription	Fetal Heart	heart
3	chr4:62247600-62262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:62250400-62252600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:62250400-62252800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:62250400-62252800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:62251000-62252800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:62251000-62254000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:62251200-62263000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:62251200-62266200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:62251400-62252800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:62251400-62252800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:62251400-62253800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:62251400-62255400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:62251600-62253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:62251800-62255400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:62252400-62252600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:62252400-62253000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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