Variant report

Variant	nsv880248
Chromosome Location	chr4:150092178-150200706
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:149972225..149974391-chr4:150191500..150193608,2	MCF-7	breast:
2	chr4:150179267..150181852-chr4:150198987..150201287,2	K562	blood:
3	chr4:150074900..150075629-chr4:150185869..150186846,2	MCF-7	breast:
4	chr4:150107886..150110536-chr4:150111462..150113624,2	K562	blood:
5	chr4:149919606..149920568-chr4:150185026..150186002,4	MCF-7	breast:
6	chr4:149971800..149972594-chr4:150185270..150185843,2	MCF-7	breast:
7	chr4:150074768..150075429-chr4:150185153..150186021,2	MCF-7	breast:
8	chr4:150179267..150181852-chr4:150198987..150201287,2	K562	blood:
9	chr4:150185022..150185571-chr4:150817333..150817853,2	MCF-7	breast:
10	chr4:150107886..150110536-chr4:150111462..150113624,2	K562	blood:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCLK2-3	chr4:150199017-150199280	NONHSAT098714
2	lnc-DCLK2-3	chr4:150177385-150177550	NONHSAT098714
3	lnc-NR3C2-9	chr4:150183251-150183387	NONHSAT098715
4	lnc-NR3C2-9	chr4:150175507-150175629	NONHSAT098715
5	lnc-DCLK2-3	chr4:150123515-150123708	NONHSAT098714
6	lnc-DCLK2-3	chr4:150181129-150181214	NONHSAT098714
7	lnc-DCLK2-3	chr4:150125045-150125304	NONHSAT098714
8	lnc-DCLK2-3	chr4:150177156-150177247	NONHSAT098714
9	lnc-DCLK2-3	chr4:150135596-150135683	NONHSAT098714
10	lnc-DCLK2-3	chr4:150137555-150137729	NONHSAT098714
11	lnc-NR3C2-9	chr4:150185470-150185581	NONHSAT098715
12	lnc-DCLK2-3	chr4:150126059-150126366	NONHSAT098714
13	lnc-DCLK2-3	chr4:150135803-150136039	NONHSAT098714
14	lnc-DCLK2-3	chr4:150139117-150139172	NONHSAT098714

No data

Variant related genes	Relation type
ENSG00000234828	chromatin interactions
ENSG00000248210	chromatin interactions

Extended variants
information (count: 1075 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:1075 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1438781	chr4:150092178-150092179	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs191424066	chr4:150092187-150092188	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs79786784	chr4:150092287-150092288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs114735664	chr4:150092298-150092299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs183346551	chr4:150092309-150092310	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs187646812	chr4:150092338-150092339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs78621053	chr4:150092366-150092367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs575987974	chr4:150092492-150092493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs544969401	chr4:150092497-150092498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs190795472	chr4:150092500-150092501	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs527577122	chr4:150092506-150092507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs17025818	chr4:150092522-150092523	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs561086519	chr4:150092529-150092530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs529879764	chr4:150092555-150092556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs374733890	chr4:150092573-150092574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs562975498	chr4:150092580-150092581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs116625824	chr4:150092638-150092639	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs551742180	chr4:150092660-150092661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs200755899	chr4:150092661-150092662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs571265268	chr4:150092676-150092677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs543267778	chr4:150092718-150092719	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs201607569	chr4:150092725-150092726	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs151195942	chr4:150092793-150092794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs547657205	chr4:150092816-150092817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs372037494	chr4:150092822-150092823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567537007	chr4:150092846-150092847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs536837274	chr4:150092863-150092864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs556014729	chr4:150092864-150092865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs72966089	chr4:150092906-150092907	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs369679358	chr4:150092909-150092910	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs140263978	chr4:150092946-150092947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs182302442	chr4:150092989-150092990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs528891759	chr4:150093078-150093079	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs573409434	chr4:150093160-150093161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs572040876	chr4:150093169-150093170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs187561627	chr4:150093184-150093185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs561148396	chr4:150093199-150093200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540623153	chr4:150093206-150093207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs547557212	chr4:150093210-150093211	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs149914372	chr4:150093214-150093215	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs562881306	chr4:150093256-150093257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs144937547	chr4:150093287-150093288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs576872799	chr4:150093290-150093291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs551537355	chr4:150093328-150093329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs374513893	chr4:150093336-150093337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs564960693	chr4:150093365-150093366	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs527646217	chr4:150093375-150093376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547718093	chr4:150093389-150093390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs567598665	chr4:150093414-150093415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs536495233	chr4:150093436-150093437	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
Epilepsy	22083797	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Acute lymphoblastic leukemia	21248843	CNVD

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150092000-150094000	Enhancers	Adipose Nuclei	Adipose
3	chr4:150092200-150095200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:150094000-150094400	Weak transcription	Adipose Nuclei	Adipose
5	chr4:150094400-150094800	Enhancers	Adipose Nuclei	Adipose
6	chr4:150096800-150097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:150097000-150097400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:150097200-150097400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:150097200-150097600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:150097200-150097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:150097200-150097600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:150097200-150097800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:150104800-150105400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:150104800-150105400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:150104800-150105400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:150104800-150105600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:150104800-150105600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:150105000-150105400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:150105000-150105600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:150105000-150105600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:150105000-150105600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:150105200-150105400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr4:150105200-150105600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:150107800-150108400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:150115400-150115600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:150117000-150117400	Enhancers	Fetal Heart	heart
27	chr4:150117400-150122600	Weak transcription	Fetal Heart	heart
28	chr4:150119400-150119600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:150119400-150119600	Enhancers	Right Ventricle	heart
30	chr4:150121800-150122200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:150122600-150123200	Enhancers	Fetal Heart	heart
32	chr4:150123200-150123600	Flanking Active TSS	Fetal Heart	heart
33	chr4:150123400-150125600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr4:150123600-150125000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:150123600-150127400	Enhancers	Fetal Heart	heart
36	chr4:150124400-150124800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:150124400-150124800	Enhancers	Adipose Nuclei	Adipose
38	chr4:150124400-150124800	Enhancers	Fetal Muscle Leg	muscle
39	chr4:150124400-150124800	Enhancers	Fetal Stomach	stomach
40	chr4:150124400-150124800	Enhancers	Spleen	Spleen
41	chr4:150124400-150124800	Enhancers	NH-A	brain
42	chr4:150124400-150125000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr4:150124600-150125200	Enhancers	Duodenum Mucosa	Duodenum
44	chr4:150125600-150126200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr4:150126200-150126400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr4:150139800-150140400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr4:150140000-150140600	ZNF genes & repeats	Pancreas	Pancrea
48	chr4:150140200-150140600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:150140600-150141000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:150150600-150151000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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