Variant report

Variant	rs1438781
Chromosome Location	chr4:150092178-150092179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10520004	0.80[ASN][1000 genomes]
rs11721563	0.83[AMR][1000 genomes]
rs11721628	0.83[AMR][1000 genomes]
rs11721908	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11725480	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1438776	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1438778	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1438779	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1438780	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17025774	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28714149	0.91[AMR][1000 genomes]
rs28754424	0.83[AMR][1000 genomes]
rs55888252	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56216840	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57512821	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6825179	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6842668	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880248	chr4:150092178-150200706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1438781	SNORD73A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150092000-150094000	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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