Variant report

Variant	rs1438779
Chromosome Location	chr4:150084424-150084425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520004	0.94[ASN][1000 genomes]
rs11721908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11725480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1438781	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17025774	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28714149	0.82[AMR][1000 genomes]
rs55888252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56216840	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57512821	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825179	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6842668	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150080600-150085200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:150082200-150085000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:150083200-150085600	Weak transcription	HSMMtube	muscle
4	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:150083600-150085200	Weak transcription	Fetal Heart	heart
6	chr4:150084200-150084600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:150084200-150086200	Enhancers	NHDF-Ad	bronchial
8	chr4:150084200-150086400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:150084200-150086600	Enhancers	NHLF	lung
10	chr4:150084400-150084600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:150084400-150084600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:150084400-150084600	Enhancers	HSMM	muscle
13	chr4:150084400-150085200	Enhancers	NH-A	brain
14	chr4:150084400-150085200	Enhancers	Osteobl	bone
15	chr4:150084400-150085400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:150084400-150086000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:150084400-150086200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:150084400-150086400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:150084400-150086400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:150084400-150086600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:150084400-150087800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:150084400-150088400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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