Variant report
| Variant | rs28714149 |
|---|---|
| Chromosome Location | chr4:150121132-150121133 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10520010 | 0.85[ASN][1000 genomes] |
| rs11721563 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11721628 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11721908 | 0.82[AMR][1000 genomes] |
| rs11725480 | 0.82[AMR][1000 genomes] |
| rs1438776 | 0.82[AMR][1000 genomes] |
| rs1438778 | 0.82[AMR][1000 genomes] |
| rs1438779 | 0.82[AMR][1000 genomes] |
| rs1438781 | 0.91[AMR][1000 genomes] |
| rs17025774 | 0.82[AMR][1000 genomes] |
| rs17025868 | 0.85[ASN][1000 genomes] |
| rs17025874 | 0.85[ASN][1000 genomes] |
| rs17025893 | 0.85[ASN][1000 genomes] |
| rs28718379 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28754424 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34436651 | 0.85[ASN][1000 genomes] |
| rs55888252 | 0.82[AMR][1000 genomes] |
| rs56216840 | 0.81[AMR][1000 genomes] |
| rs57512821 | 0.81[AMR][1000 genomes] |
| rs6825179 | 0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880247 | chr4:150057979-150159936 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022438 | chr4:150066349-150196711 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv595687 | chr4:150070596-150178533 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv880248 | chr4:150092178-150200706 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv968014 | chr4:150120268-150123670 | Enhancers Weak transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:150117400-150122600 | Weak transcription | Fetal Heart | heart |
