Variant report

Variant	nsv968014
Chromosome Location	chr4:150120268-150123670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCLK2-3	chr4:150123515-150123708	NONHSAT098714

Extended variants
information (count: 123 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:123 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575067052	chr4:150120279-150120280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs528822523	chr4:150120295-150120296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs548591878	chr4:150120396-150120397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568683928	chr4:150120457-150120458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537252168	chr4:150120477-150120478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187536272	chr4:150120491-150120492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs17487752	chr4:150120494-150120495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7688222	chr4:150120495-150120496	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs552580983	chr4:150120522-150120523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543032919	chr4:150120535-150120536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs572486644	chr4:150120540-150120541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377175001	chr4:150120544-150120545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs4434227	chr4:150120585-150120586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs28415117	chr4:150120613-150120614	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs542440984	chr4:150120617-150120618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs561022666	chr4:150120629-150120630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs59885951	chr4:150120632-150120633	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs7688092	chr4:150120652-150120653	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs546678083	chr4:150120656-150120657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1438762	chr4:150120670-150120671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs79765435	chr4:150120692-150120693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564237561	chr4:150120701-150120702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183461144	chr4:150120792-150120793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs151173913	chr4:150120809-150120810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs542742317	chr4:150120810-150120811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574360497	chr4:150120818-150120819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564687489	chr4:150120850-150120851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371544980	chr4:150120959-150120960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552060388	chr4:150120981-150120982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs28397870	chr4:150120986-150120987	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs369374943	chr4:150121000-150121001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142647260	chr4:150121112-150121113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs60482193	chr4:150121122-150121123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562255622	chr4:150121126-150121127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28714149	chr4:150121132-150121133	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs550918125	chr4:150121147-150121148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs147882537	chr4:150121157-150121158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141508337	chr4:150121178-150121179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546277675	chr4:150121182-150121183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs566175510	chr4:150121205-150121206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535105478	chr4:150121235-150121236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555301484	chr4:150121308-150121309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189163720	chr4:150121343-150121344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538114282	chr4:150121479-150121480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs143620538	chr4:150121485-150121486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs116411397	chr4:150121486-150121487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs17025858	chr4:150121514-150121515	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs193069000	chr4:150121576-150121577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs17025861	chr4:150121597-150121598	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs541875141	chr4:150121638-150121639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
Epilepsy	22083797	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	19100363	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150117400-150122600	Weak transcription	Fetal Heart	heart
2	chr4:150121800-150122200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:150122600-150123200	Enhancers	Fetal Heart	heart
4	chr4:150123200-150123600	Flanking Active TSS	Fetal Heart	heart
5	chr4:150123400-150125600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:150123600-150125000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:150123600-150127400	Enhancers	Fetal Heart	heart

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