Variant report

Variant	nsv883009
Chromosome Location	chr5:145567877-145672431
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1408)
CpG islands
(count:612)
Chromatin interactive
region (count:86)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

(count:1408 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:145670992-145671314	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:145572277-145572484	K562	blood:	n/a	n/a
3	ARID3A	chr5:145570492-145570635	HepG2	liver:	n/a	n/a
4	ARID3A	chr5:145582474-145583196	HepG2	liver:	n/a	n/a
5	ARID3A	chr5:145593038-145593693	HepG2	liver:	n/a	n/a
6	ARID3A	chr5:145592962-145593348	K562	blood:	n/a	n/a
7	ARID3A	chr5:145582257-145583366	K562	blood:	n/a	n/a
8	ATF1	chr5:145582723-145583251	K562	blood:	n/a	n/a
9	ATF1	chr5:145572359-145572575	K562	blood:	n/a	n/a
10	ATF2	chr5:145582497-145583292	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr5:145585728-145586264	GM12878	blood:	n/a	n/a
12	ATF2	chr5:145582523-145583339	GM12878	blood:	n/a	n/a
13	ATF3	chr5:145572119-145572521	K562	blood:	n/a	n/a
14	ATF3	chr5:145582548-145583298	A549	lung:	n/a	chr5:145582838-145582846
15	ATF3	chr5:145581363-145581609	K562	blood:	n/a	n/a
16	ATF3	chr5:145572846-145573233	K562	blood:	n/a	n/a
17	BACH1	chr5:145582529-145582857	K562	blood:	n/a	n/a
18	BACH1	chr5:145582680-145583388	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr5:145620815-145620864	K562	blood:	n/a	n/a
20	BATF	chr5:145582607-145582889	GM12878	blood:	n/a	chr5:145582770-145582780
21	BATF	chr5:145618600-145618803	GM12878	blood:	n/a	chr5:145618713-145618724
22	BATF	chr5:145582596-145583207	GM12878	blood:	n/a	chr5:145582770-145582780
23	BCL3	chr5:145582511-145582937	GM12878	blood:	n/a	chr5:145582769-145582778 chr5:145582882-145582895 chr5:145582885-145582898
24	BCLAF1	chr5:145582508-145583443	GM12878	blood:	n/a	chr5:145582769-145582778 chr5:145583026-145583039 chr5:145582882-145582895 chr5:145582885-145582898 chr5:145583026-145583039
25	BHLHE40	chr5:145585275-145585284	GM12878	blood:	n/a	n/a
26	BHLHE40	chr5:145582540-145583357	GM12878	blood:	n/a	chr5:145582881-145582897 chr5:145583025-145583041 chr5:145582853-145582869
27	BHLHE40	chr5:145597993-145598128	K562	blood:	n/a	n/a
28	BHLHE40	chr5:145646919-145646923	K562	blood:	n/a	n/a
29	BHLHE40	chr5:145582110-145583388	K562	blood:	n/a	chr5:145582881-145582897 chr5:145583025-145583041 chr5:145582853-145582869
30	BHLHE40	chr5:145581385-145581559	K562	blood:	n/a	n/a
31	BHLHE40	chr5:145584822-145584968	K562	blood:	n/a	n/a
32	BHLHE40	chr5:145582528-145583353	HepG2	liver:	n/a	chr5:145582881-145582897 chr5:145583025-145583041 chr5:145582853-145582869
33	BHLHE40	chr5:145582562-145583141	A549	lung:	n/a	chr5:145582881-145582897 chr5:145583025-145583041 chr5:145582853-145582869
34	BRCA1	chr5:145582060-145583357	Hela-S3	cervix:	n/a	n/a
35	BRCA1	chr5:145582653-145583223	GM12878	blood:	n/a	n/a
36	BRCA1	chr5:145583213-145583228	HepG2	liver:	n/a	n/a
37	CBX3	chr5:145582399-145583335	K562	blood:	n/a	n/a
38	CBX3	chr5:145662776-145663477	HCT-116	colon:	n/a	chr5:145662797-145662808
39	CCNT2	chr5:145582655-145583397	K562	blood:	n/a	n/a
40	CCNT2	chr5:145645217-145645417	K562	blood:	n/a	n/a
41	CEBPB	chr5:145593149-145593439	K562	blood:	n/a	chr5:145593299-145593310 chr5:145593298-145593311
42	CEBPB	chr5:145572218-145572579	HepG2	liver:	n/a	chr5:145572387-145572398
43	CEBPB	chr5:145602736-145603055	K562	blood:	n/a	n/a
44	CEBPB	chr5:145575846-145576078	K562	blood:	n/a	n/a
45	CEBPB	chr5:145572231-145572573	A549	lung:	n/a	chr5:145572387-145572398
46	CEBPB	chr5:145572135-145572600	K562	blood:	n/a	chr5:145572387-145572398
47	CEBPB	chr5:145593200-145593379	HepG2	liver:	n/a	chr5:145593299-145593310 chr5:145593298-145593311
48	CEBPB	chr5:145659238-145659442	A549	lung:	n/a	n/a
49	CEBPB	chr5:145572830-145573206	K562	blood:	n/a	chr5:145573024-145573035
50	CEBPB	chr5:145572237-145572544	H1-hESC	embryonic stem cell:	n/a	chr5:145572387-145572398

(count:612 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:145579573-145579623	HMEC	breast:	n/a
2	chr5:145583025-145583075	Caco-2	colon:	n/a
3	chr5:145579573-145579623	HMEC	breast:	n/a
4	chr5:145583025-145583075	Caco-2	colon:	n/a
5	chr5:145582897-145582947	LNCaP	prostate:	n/a
6	chr5:145582897-145582947	AG09309	skin:	n/a
7	chr5:145583671-145583721	SK-N-SH_RA	brain:	n/a
8	chr5:145583408-145583458	T-47D	breast:	n/a
9	chr5:145583510-145583560	HUVEC	blood vessel:	n/a
10	chr5:145583122-145583172	Hepatocyte	liver:	n/a
11	chr5:145587156-145587206	AG10803	skin:	n/a
12	chr5:145583025-145583075	SK-N-SH	brain:	n/a
13	chr5:145582897-145582947	GM12878	blood:	n/a
14	chr5:145579573-145579623	HAEpiC	amniotic membrane:	n/a
15	chr5:145582568-145582618	Caco-2	colon:	n/a
16	chr5:145579573-145579623	HCPEpiC	choroid plexus:	n/a
17	chr5:145587156-145587206	AoSMC	blood vessel:	n/a
18	chr5:145583220-145583270	U87	brain:	n/a
19	chr5:145587156-145587206	PANC-1	pancreas:	n/a
20	chr5:145583220-145583270	GM12878	blood:	n/a
21	chr5:145579573-145579623	GM19239	blood:	n/a
22	chr5:145583220-145583270	HCM	heart:	n/a
23	chr5:145583025-145583075	MCF10A-Er-Src	breast:	n/a
24	chr5:145583122-145583172	RPTEC	kidney:	n/a
25	chr5:145583671-145583721	T-47D	breast:	n/a
26	chr5:145583510-145583560	MCF-7	breast:	n/a
27	chr5:145579573-145579623	HNPCEpiC	eye:	n/a
28	chr5:145583025-145583075	GM12892	blood:	n/a
29	chr5:145582897-145582947	HCF	heart:	n/a
30	chr5:145582568-145582618	SK-N-MC	brain:	n/a
31	chr5:145587156-145587206	GM12878	blood:	n/a
32	chr5:145583510-145583560	A549	lung:	n/a
33	chr5:145583025-145583075	NT2-D1	testis:	n/a
34	chr5:145583671-145583721	HEEpiC	esophagus:	n/a
35	chr5:145587156-145587206	HUVEC	blood vessel:	n/a
36	chr5:145583671-145583721	HCF	heart:	n/a
37	chr5:145583025-145583075	HCF	heart:	n/a
38	chr5:145582568-145582618	HAEpiC	amniotic membrane:	n/a
39	chr5:145583408-145583458	Jurkat	blood:	n/a
40	chr5:145587156-145587206	HIPEpiC	eye:	n/a
41	chr5:145582897-145582947	ovcar-3	ovarian:	n/a
42	chr5:145583510-145583560	Jurkat	blood:	n/a
43	chr5:145583510-145583560	HRPEpiC	eye:	n/a
44	chr5:145579573-145579623	BE2_C	brain:	n/a
45	chr5:145582568-145582618	HEK293	kidney:	embryo
46	chr5:145587156-145587206	MCF10A-Er-Src	breast:	n/a
47	chr5:145583408-145583458	PrEC	prostate:	n/a
48	chr5:145582897-145582947	BJ	skin:	n/a
49	chr5:145582897-145582947	AG09319	gingival:	n/a
50	chr5:145583408-145583458	HAEpiC	amniotic membrane:	n/a

(count:86 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr5:145572815..145574844-chr5:145581560..145583994,2	K562	blood:
2	chr5:145560154..145562997-chr5:145607826..145610384,3	K562	blood:
3	chr5:145595165..145597126-chr5:145598903..145601685,2	K562	blood:
4	chr5:145587938..145589813-chr5:145591754..145593477,2	K562	blood:
5	chr5:145575147..145576738-chr5:145585123..145587175,2	K562	blood:
6	chr5:145670705..145671717-chr5:145769549..145770704,7	MCF-7	breast:
7	chr5:145581405..145584024-chr5:145596123..145597883,2	K562	blood:
8	chr5:145573844..145576885-chr5:145577748..145580180,3	K562	blood:
9	chr5:145564650..145566770-chr5:145588134..145589874,2	K562	blood:
10	chr5:145562850..145566563-chr5:145571128..145574037,3	MCF-7	breast:
11	chr5:145670730..145671380-chr5:145770136..145770700,3	MCF-7	breast:
12	chr5:145670731..145671269-chr5:145912930..145913474,2	K562	blood:
13	chr5:145670701..145671468-chr5:145806285..145807382,6	MCF-7	breast:
14	chr5:145591065..145593762-chr5:145596165..145598951,2	K562	blood:
15	chr5:145560592..145565120-chr5:145580444..145584486,7	K562	blood:
16	chr5:145607480..145610119-chr5:145611867..145613573,2	MCF-7	breast:
17	chr5:145661955..145664023-chr5:145664235..145667190,2	K562	blood:
18	chr5:145612339..145614307-chr5:145615895..145618813,2	MCF-7	breast:
19	chr5:145670855..145671711-chr5:145804344..145805276,3	MCF-7	breast:
20	chr5:145625443..145628007-chr5:145629715..145633107,5	K562	blood:
21	chr5:145625869..145628007-chr5:145631607..145633546,2	K562	blood:
22	chr5:145574849..145577179-chr5:145580631..145584076,3	K562	blood:
23	chr5:145594426..145596514-chr5:145599170..145601456,2	K562	blood:
24	chr3:73159944..73160587-chr5:145583064..145583574,2	Hela-S3	cervix:
25	chr5:145577261..145580172-chr5:145580674..145584056,4	K562	blood:
26	chr5:145570785..145572816-chr5:145582211..145584363,2	MCF-7	breast:
27	chr5:145625814..145628687-chr5:145636719..145638380,2	K562	blood:
28	chr5:145559594..145562426-chr5:145581996..145584629,4	MCF-7	breast:
29	chr5:145588075..145590940-chr5:145591754..145595862,4	K562	blood:
30	chr5:145653852..145655797-chr5:145658433..145661229,2	K562	blood:
31	chr5:145601632..145604303-chr5:145605562..145607960,2	MCF-7	breast:
32	chr5:145595165..145597126-chr5:145598903..145601685,2	K562	blood:
33	chr5:145582535..145584854-chr5:145588808..145592360,5	MCF-7	breast:
34	chr5:145562172..145563864-chr5:145572601..145575538,2	K562	blood:
35	chr5:145567639..145569805-chr5:145575511..145577560,2	K562	blood:
36	chr5:145573844..145575489-chr5:145577748..145580152,2	K562	blood:
37	chr5:145553826..145555566-chr5:145583178..145584730,2	K562	blood:
38	chr14:21566818..21567426-chr5:145582956..145583681,2	Hela-S3	cervix:
39	chr5:145661955..145664023-chr5:145664235..145668387,3	K562	blood:
40	chr5:145596117..145598265-chr5:145605012..145606909,2	K562	blood:
41	chr5:145615949..145618767-chr5:145647272..145650054,2	K562	blood:
42	chr5:145596366..145598063-chr5:145648958..145650482,2	K562	blood:
43	chr5:145625814..145628687-chr5:145636719..145638380,2	K562	blood:
44	chr5:145615949..145618767-chr5:145647272..145650054,2	K562	blood:
45	chr5:145558307..145563846-chr5:145580315..145584343,10	K562	blood:
46	chr5:145670280..145672735-chr5:145688584..145691508,2	K562	blood:
47	chr5:145661955..145664023-chr5:145664235..145668387,3	K562	blood:
48	chr5:145587938..145589813-chr5:145591754..145593477,2	K562	blood:
49	chr5:145573844..145576885-chr5:145577748..145580180,3	K562	blood:
50	chr5:145607480..145610119-chr5:145611867..145613573,2	MCF-7	breast:

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	RBM27	hsa-miR-25-3p	chr5:145668659-145668665
2	RBM27	hsa-miR-186-5p	chr5:145666629-145666653
3	RBM27	hsa-miR-92a-3p	chr5:145668659-145668665

Variant related genes	Relation type
RBM27	TF binding region
RNU7-180P	TF binding region
RBM27	CpG island
RNU7-180P	CpG island
ENSG00000091009	chromatin interactions
ENSG00000133706	chromatin interactions
ENSG00000232070	chromatin interactions
ENSG00000165804	chromatin interactions
ENSG00000223247	chromatin interactions

Extended variants
information (count: 3850 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:3850 , 50 per page) page: 1 2 3 4 5 6 7 ... 77

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2063002	chr5:145567877-145567878	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs576363104	chr5:145567940-145567941	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs141111733	chr5:145567953-145567954	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs558559614	chr5:145568008-145568009	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs572019699	chr5:145568046-145568047	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs540751682	chr5:145568188-145568189	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs554675327	chr5:145568220-145568221	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs574146909	chr5:145568230-145568231	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs563004781	chr5:145568342-145568343	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs17104298	chr5:145568364-145568365	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs11957998	chr5:145568410-145568411	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs184028703	chr5:145568445-145568446	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs145059496	chr5:145568461-145568462	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs564922207	chr5:145568462-145568463	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs559315473	chr5:145568494-145568495	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs527712953	chr5:145568496-145568497	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs111508389	chr5:145568536-145568537	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs11948016	chr5:145568549-145568550	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs530145953	chr5:145568564-145568565	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs549953640	chr5:145568576-145568577	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs569887264	chr5:145568599-145568600	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs116803572	chr5:145568618-145568619	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs142646157	chr5:145568640-145568641	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs565515398	chr5:145568662-145568663	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs570685121	chr5:145568676-145568677	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs373040892	chr5:145568678-145568679	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs561461262	chr5:145568742-145568743	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs200769306	chr5:145568753-145568754	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs375219950	chr5:145568754-145568755	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs554357169	chr5:145568769-145568770	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs150232554	chr5:145568772-145568773	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs115926700	chr5:145568777-145568778	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs550403576	chr5:145568829-145568830	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs570026868	chr5:145568857-145568858	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs576266351	chr5:145568905-145568906	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs138902956	chr5:145568919-145568920	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs565284436	chr5:145568948-145568949	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs35399508	chr5:145568968-145568969	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs181526737	chr5:145569016-145569017	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs113734649	chr5:145569027-145569028	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs186593656	chr5:145569034-145569035	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs561128437	chr5:145569046-145569047	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs539141153	chr5:145569050-145569051	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs56382356	chr5:145569068-145569069	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs148945780	chr5:145569079-145569080	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs569850081	chr5:145569095-145569096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs532372115	chr5:145569134-145569135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs143701059	chr5:145569164-145569165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs566094907	chr5:145569181-145569182	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs73317870	chr5:145569221-145569222	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	16864856	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	20864512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2896 , 50 per page) page: 1 2 3 4 5 6 7 ... 58

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145562800-145569800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:145563000-145568000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:145563000-145568800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:145563000-145582200	Weak transcription	Right Atrium	heart
5	chr5:145563400-145570600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:145565200-145569800	Weak transcription	HMEC	breast
7	chr5:145565200-145570400	Weak transcription	Osteobl	bone
8	chr5:145567400-145568600	Enhancers	NHEK	skin
9	chr5:145567600-145570800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:145567600-145571000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:145567800-145568400	Enhancers	NH-A	brain
12	chr5:145567800-145568600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:145567800-145568600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:145567800-145568600	Enhancers	NHDF-Ad	bronchial
15	chr5:145568000-145568400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:145568200-145568600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:145568400-145569200	Weak transcription	NH-A	brain
18	chr5:145568600-145569800	Weak transcription	NHEK	skin
19	chr5:145568600-145570000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:145568600-145570400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:145568800-145569000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:145569200-145569400	Enhancers	NH-A	brain
23	chr5:145569400-145569800	Weak transcription	NH-A	brain
24	chr5:145569800-145570000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:145569800-145570600	Enhancers	NH-A	brain
26	chr5:145569800-145570800	Enhancers	HepG2	liver
27	chr5:145569800-145570800	Enhancers	HMEC	breast
28	chr5:145569800-145571000	Enhancers	NHEK	skin
29	chr5:145570000-145571000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:145570400-145570800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:145570400-145570800	Enhancers	Osteobl	bone
32	chr5:145570600-145570800	Enhancers	K562	blood
33	chr5:145570600-145571200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:145570600-145572800	Weak transcription	NH-A	brain
35	chr5:145570800-145572200	Weak transcription	K562	blood
36	chr5:145570800-145572400	Weak transcription	HepG2	liver
37	chr5:145570800-145572800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:145570800-145573000	Weak transcription	Osteobl	bone
39	chr5:145571000-145572800	Weak transcription	NHEK	skin
40	chr5:145571000-145573000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:145571000-145582400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr5:145571200-145571400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:145572200-145573200	Enhancers	K562	blood
44	chr5:145572400-145573200	Enhancers	HepG2	liver
45	chr5:145572800-145573000	Enhancers	NH-A	brain
46	chr5:145572800-145573200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:145572800-145573200	Enhancers	NHEK	skin
48	chr5:145573000-145573200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:145573000-145573200	Enhancers	Osteobl	bone
50	chr5:145573200-145579000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links