Variant report

Variant	rs2063002
Chromosome Location	chr5:145567877-145567878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145567639..145569805-chr5:145575511..145577560,2	K562	blood:
2	chr5:145560642..145563806-chr5:145566350..145569083,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133706	Chromatin interaction

Extended variants
information (count: 375 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:369)

rs_ID	r²[population]
rs1006204	1.00[JPT][hapmap]
rs10491259	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10491260	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10491261	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10515564	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10515565	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs10515566	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10515567	0.90[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1054020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10988	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11167931	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11167932	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167933	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167934	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167936	1.00[ASN][1000 genomes]
rs11167937	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11540214	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11540215	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540217	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948016	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948180	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948314	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11949351	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949352	0.81[EUR][1000 genomes]
rs11949703	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11950903	0.98[ASN][1000 genomes]
rs11951553	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11952228	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11952445	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11952697	0.81[EUR][1000 genomes]
rs11953090	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11953506	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11953517	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11953586	0.81[EUR][1000 genomes]
rs11954083	0.91[CEU][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954297	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11954750	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954870	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954923	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954977	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11955206	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11955443	0.82[ASN][1000 genomes]
rs11955557	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11955635	0.86[ASN][1000 genomes]
rs11956508	0.81[EUR][1000 genomes]
rs11957830	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957888	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957907	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11957998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958136	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11958216	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11958633	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11959805	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11960510	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12153109	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12153238	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153364	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12186358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12186642	0.82[EUR][1000 genomes]
rs12187128	0.81[EUR][1000 genomes]
rs12187277	1.00[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs12187649	0.82[EUR][1000 genomes]
rs12187913	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs12188581	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs12188772	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188941	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12189077	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12189385	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12374457	0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap]
rs12374516	0.80[EUR][1000 genomes]
rs12374538	0.94[JPT][hapmap]
rs13153675	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13153891	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13154219	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13154547	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154735	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155119	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13157279	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157784	0.83[AMR][1000 genomes]
rs13159380	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160905	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13161036	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161075	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161488	1.00[ASN][1000 genomes]
rs13161659	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13162175	0.98[ASN][1000 genomes]
rs13162233	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13162640	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13164872	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13164882	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13168967	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13169370	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13169390	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13171596	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171828	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13171939	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs13172010	0.82[ASN][1000 genomes]
rs13173347	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13173462	0.89[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13174055	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13175587	1.00[ASN][1000 genomes]
rs13176784	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176915	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178370	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178443	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13178516	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178755	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178840	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13179296	0.98[ASN][1000 genomes]
rs13179517	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180113	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13180255	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13181074	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13182302	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13182567	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13182838	0.81[EUR][1000 genomes]
rs13182948	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13183541	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13183976	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs13184702	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185586	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185805	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13186694	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186701	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395276	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1395277	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506431	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567057	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs17104255	0.86[ASN][1000 genomes]
rs17212373	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17212380	0.81[EUR][1000 genomes]
rs17426845	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17427286	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17427691	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428100	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428465	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428570	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428647	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17428724	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429180	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17443315	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17492851	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17492893	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17492950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17493090	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17493851	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500456	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500483	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17500504	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500927	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501177	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17501601	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17502157	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17502233	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17502345	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17687490	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17796852	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs17796858	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17796864	0.91[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs17796870	0.91[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs17796876	0.81[EUR][1000 genomes]
rs1859897	0.82[YRI][hapmap]
rs1876189	0.98[ASN][1000 genomes]
rs1911112	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1911113	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985600	0.81[EUR][1000 genomes]
rs2014469	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2015248	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2024055	0.91[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2024056	1.00[JPT][hapmap]
rs2024057	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2053045	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2063005	0.92[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2116749	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2240524	0.80[EUR][1000 genomes]
rs2279895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292172	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292173	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2302036	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2304032	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2304033	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2400209	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2400211	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2895647	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895648	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895649	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895650	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2939522	0.91[YRI][hapmap]
rs2939523	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs2939533	1.00[ASN][1000 genomes]
rs2939534	0.91[YRI][hapmap]
rs2939535	1.00[ASN][1000 genomes]
rs2939536	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2939537	0.91[MKK][hapmap]
rs2939538	0.90[YRI][hapmap]
rs2939539	0.88[ASN][1000 genomes]
rs2962500	0.80[LWK][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap]
rs2962502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2962503	0.88[ASN][1000 genomes]
rs2962505	0.91[YRI][hapmap]
rs2962507	0.91[YRI][hapmap]
rs2962509	0.88[ASN][1000 genomes]
rs2962510	0.85[ASN][1000 genomes]
rs2962511	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2962512	0.84[LWK][hapmap];0.91[MKK][hapmap]
rs2962514	0.91[YRI][hapmap]
rs2962515	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962516	0.91[YRI][hapmap]
rs2963914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2963915	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2963918	0.88[ASN][1000 genomes]
rs2963919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2963920	0.86[ASN][1000 genomes]
rs2963921	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2963922	0.88[ASN][1000 genomes]
rs2963923	0.88[ASN][1000 genomes]
rs2963924	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2963937	0.91[YRI][hapmap]
rs2963938	0.80[AFR][1000 genomes]
rs33914983	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34014355	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34049009	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34071526	0.81[EUR][1000 genomes]
rs34078408	0.81[EUR][1000 genomes]
rs34082425	0.82[ASN][1000 genomes]
rs34141601	0.85[ASN][1000 genomes]
rs34160255	0.81[EUR][1000 genomes]
rs34170515	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs34272709	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34342344	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34345997	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34404385	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34405762	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34444119	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34461274	0.86[ASN][1000 genomes]
rs34482773	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34516108	0.81[EUR][1000 genomes]
rs34519824	0.99[ASN][1000 genomes]
rs34529192	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34530601	0.81[EUR][1000 genomes]
rs34533649	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34581962	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34601905	0.81[EUR][1000 genomes]
rs34672485	0.88[ASN][1000 genomes]
rs34683303	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34774165	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34775587	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34794113	0.88[ASN][1000 genomes]
rs34794547	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34812645	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34818573	0.81[EUR][1000 genomes]
rs34818690	0.81[EUR][1000 genomes]
rs34819107	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34848484	0.80[EUR][1000 genomes]
rs34993855	0.82[AMR][1000 genomes]
rs35048100	0.88[ASN][1000 genomes]
rs35048686	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35142541	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35150639	0.81[EUR][1000 genomes]
rs35170264	0.82[ASN][1000 genomes]
rs35228139	0.81[EUR][1000 genomes]
rs35238125	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35262581	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35421100	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35421875	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35424128	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35436549	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35575652	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35652702	0.81[EUR][1000 genomes]
rs35658996	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35676277	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35749752	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35801832	0.81[EUR][1000 genomes]
rs35821418	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35825928	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35868039	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35869904	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35870798	0.84[EUR][1000 genomes]
rs35917756	0.81[EUR][1000 genomes]
rs35935643	0.85[ASN][1000 genomes]
rs36019024	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36059140	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36095232	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36098188	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36102990	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36122632	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3749994	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3763373	0.87[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3797626	0.81[EUR][1000 genomes]
rs3797627	0.81[EUR][1000 genomes]
rs3797628	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822623	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828935	0.87[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41338847	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4413574	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443471	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705119	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705156	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs4705157	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4705179	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4705398	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705438	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705445	0.98[ASN][1000 genomes]
rs4913061	0.80[EUR][1000 genomes]
rs4913062	0.81[EUR][1000 genomes]
rs4913063	0.81[EUR][1000 genomes]
rs4913064	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4913065	0.82[ASN][1000 genomes]
rs4913066	0.82[ASN][1000 genomes]
rs4913067	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55665974	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55681213	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55726586	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55782203	0.81[EUR][1000 genomes]
rs55799797	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55812375	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55874924	0.81[EUR][1000 genomes]
rs55909935	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55937908	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56240028	0.98[ASN][1000 genomes]
rs56278005	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56338615	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393319	0.80[EUR][1000 genomes]
rs56410805	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372766	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62372767	0.86[EUR][1000 genomes]
rs62372768	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62372769	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62372772	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62373771	0.83[ASN][1000 genomes]
rs62373785	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373786	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373789	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373798	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373799	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62373801	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373802	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373809	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373810	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373811	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373812	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373813	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62373819	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373823	0.92[ASN][1000 genomes]
rs62373824	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62373831	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580408	1.00[JPT][hapmap]
rs66538287	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67051761	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67598659	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67829086	0.81[EUR][1000 genomes]
rs67986716	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6861532	0.93[ASN][1000 genomes]
rs6877277	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6878005	0.82[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs6881180	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs6882517	0.85[ASN][1000 genomes]
rs71594528	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72822286	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707229	0.82[YRI][hapmap]
rs7711896	0.98[ASN][1000 genomes]
rs7722258	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs7727353	0.88[ASN][1000 genomes]
rs7728381	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7728631	0.82[ASN][1000 genomes]
rs7729098	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs9918101	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9918130	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883008	chr5:145509728-145642925	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3348501	chr5:145543808-145572250	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv883009	chr5:145567877-145672431	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2063002	LARS	cis	Nerve Tibial	GTEx
rs2063002	OAT	trans	lymphoblastoid	seeQTL
rs2063002	LARS	cis	Thyroid	GTEx
rs2063002	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs2063002	LARS	cis	parietal	SCAN
rs2063002	LARS	cis	cerebellum	SCAN
rs2063002	LARS	cis	Artery Tibial	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145562800-145569800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:145563000-145568000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:145563000-145568800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:145563000-145582200	Weak transcription	Right Atrium	heart
5	chr5:145563400-145570600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:145565200-145569800	Weak transcription	HMEC	breast
7	chr5:145565200-145570400	Weak transcription	Osteobl	bone
8	chr5:145567400-145568600	Enhancers	NHEK	skin
9	chr5:145567600-145570800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:145567600-145571000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:145567800-145568400	Enhancers	NH-A	brain
12	chr5:145567800-145568600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:145567800-145568600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:145567800-145568600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

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