Variant report

Variant	rs13155119
Chromosome Location	chr5:145642007-145642008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 238 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10491259	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs10491260	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10491261	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10515564	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs10515565	0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs10515566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10515567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1054020	1.00[CHB][hapmap]
rs1115080	0.93[ASN][1000 genomes]
rs11167932	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11167937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11540215	0.85[AMR][1000 genomes]
rs11948016	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11948314	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11949351	0.85[AMR][1000 genomes]
rs11952445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11953090	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11953506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11953517	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs11954083	0.82[CEU][hapmap]
rs11954297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11954750	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11954977	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11955206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11957830	0.84[AMR][1000 genomes]
rs11957888	0.85[AMR][1000 genomes]
rs11957907	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11957998	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11958136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11958216	0.80[EUR][1000 genomes]
rs11958633	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11960510	0.86[CEU][hapmap]
rs12152830	0.94[ASN][1000 genomes]
rs12153109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12153364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12186358	1.00[CHB][hapmap]
rs12187277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12187913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[TSI][hapmap]
rs12188581	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12188772	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12189077	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12189385	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12374457	0.85[JPT][hapmap];0.96[MEX][hapmap]
rs12374538	0.84[JPT][hapmap]
rs13153675	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs13153891	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13154219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13154735	0.85[AMR][1000 genomes]
rs13157279	0.85[AMR][1000 genomes]
rs13157784	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13159380	0.85[AMR][1000 genomes]
rs13160605	0.93[ASN][1000 genomes]
rs13160905	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13161036	0.85[AMR][1000 genomes]
rs13161075	0.92[CHB][hapmap]
rs13161659	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13164872	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13168967	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13169370	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13169390	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171596	0.85[AMR][1000 genomes]
rs13171939	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13173347	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13173462	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13176784	0.82[AMR][1000 genomes]
rs13176915	0.85[AMR][1000 genomes]
rs13177015	0.93[ASN][1000 genomes]
rs13178370	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13178443	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13178516	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13178755	0.85[AMR][1000 genomes]
rs13178840	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13179517	0.85[AMR][1000 genomes]
rs13180255	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13181074	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13182302	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13182567	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs13182948	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13183541	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183976	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13185518	0.91[ASN][1000 genomes]
rs13185586	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13186694	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13186701	0.85[AMR][1000 genomes]
rs1368345	0.94[ASN][1000 genomes]
rs1395277	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1506431	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1567057	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17096590	0.91[ASN][1000 genomes]
rs17212373	0.82[CEU][hapmap]
rs17426775	1.00[ASW][hapmap]
rs17427286	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17427691	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17428100	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17428465	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17428570	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17428647	0.85[AMR][1000 genomes]
rs17428724	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes]
rs17429180	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17443315	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17492851	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492950	1.00[CHB][hapmap]
rs17493090	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17500483	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs17500504	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17500927	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17501177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17501601	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17502157	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17502233	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17502345	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17687490	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17796852	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs17796858	0.82[CEU][hapmap]
rs17796864	0.82[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17796870	0.82[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs1864948	0.94[ASN][1000 genomes]
rs1911112	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1911113	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2014462	0.94[ASN][1000 genomes]
rs2014469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2014473	0.94[ASN][1000 genomes]
rs2024055	0.82[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2024057	0.82[CEU][hapmap]
rs2053045	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2063005	0.92[CHB][hapmap];0.84[CHD][hapmap]
rs2116749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2279895	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2302036	0.82[CEU][hapmap]
rs2304032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2304033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2400209	0.92[CHB][hapmap]
rs2400211	1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895647	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2895648	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895649	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2939523	0.86[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2939536	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2962502	1.00[CHB][hapmap]
rs2962511	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2962515	0.82[AMR][1000 genomes]
rs2963914	1.00[CHB][hapmap]
rs2963915	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2963919	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2963921	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2963926	0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs33914983	0.85[AMR][1000 genomes]
rs34014355	0.85[AMR][1000 genomes]
rs34082425	0.91[ASN][1000 genomes]
rs34141601	0.90[ASN][1000 genomes]
rs34170515	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs34405762	0.82[AMR][1000 genomes]
rs34444119	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34533649	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34775587	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34812645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34819107	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34993855	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35048686	0.85[AMR][1000 genomes]
rs35142541	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35170264	0.85[ASN][1000 genomes]
rs35369194	0.89[ASN][1000 genomes]
rs35421100	0.85[AMR][1000 genomes]
rs35575652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35728795	0.84[ASN][1000 genomes]
rs35870798	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35935643	0.90[ASN][1000 genomes]
rs35947468	0.96[ASN][1000 genomes]
rs36019024	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3749994	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs3763373	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs3797628	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap]
rs3822623	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3828935	0.92[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap]
rs3937558	0.94[ASN][1000 genomes]
rs41338847	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs4413574	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs4443471	0.85[AMR][1000 genomes]
rs4705156	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4705157	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4705179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4913064	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs55665974	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55726586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55799797	0.85[AMR][1000 genomes]
rs55909935	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55937908	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56338615	0.85[AMR][1000 genomes]
rs56410805	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56413906	0.91[ASN][1000 genomes]
rs58848845	0.93[ASN][1000 genomes]
rs62372766	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62372767	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62372768	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372773	0.96[ASN][1000 genomes]
rs62373811	0.81[AMR][1000 genomes]
rs62373812	0.85[AMR][1000 genomes]
rs62373813	0.85[AMR][1000 genomes]
rs62373819	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62373824	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62373831	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580413	0.94[ASN][1000 genomes]
rs6867146	0.96[ASN][1000 genomes]
rs6868728	0.94[ASN][1000 genomes]
rs6870878	0.91[ASN][1000 genomes]
rs6877277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6878005	0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6881180	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6882517	0.88[ASN][1000 genomes]
rs6884493	0.96[ASN][1000 genomes]
rs6893994	0.91[ASN][1000 genomes]
rs71594528	0.85[AMR][1000 genomes]
rs7443214	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7702123	0.98[ASN][1000 genomes]
rs7703269	0.98[ASN][1000 genomes]
rs7722258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7724811	0.96[ASN][1000 genomes]
rs7727353	0.85[ASN][1000 genomes]
rs7728381	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs7729098	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9918101	1.00[CHB][hapmap];0.93[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883008	chr5:145509728-145642925	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv883009	chr5:145567877-145672431	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv462475	chr5:145583623-145642007	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv599935	chr5:145583623-145642007	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv883010	chr5:145583623-145651979	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv883011	chr5:145583623-145672431	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv883012	chr5:145589542-145672431	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv883013	chr5:145595837-145651979	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs13155119	LARS	cis	Nerve Tibial	GTEx
rs13155119	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs13155119	LARS	cis	cerebellum	SCAN
rs13155119	LARS	cis	Artery Tibial	GTEx
rs13155119	LARS	cis	Thyroid	GTEx
rs13155119	LARS	cis	parietal	SCAN
rs13155119	LARS	cis	Esophagus Muscularis	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145593400-145651000	Weak transcription	Stomach Mucosa	stomach
2	chr5:145597000-145668400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:145601800-145648200	Weak transcription	Fetal Brain Male	brain
4	chr5:145602600-145647000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:145602600-145653800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:145611200-145670600	Weak transcription	Small Intestine	intestine
7	chr5:145613400-145658800	Weak transcription	Pancreas	Pancrea
8	chr5:145617400-145648200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:145617600-145642600	Weak transcription	Spleen	Spleen
10	chr5:145618000-145642400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:145621000-145664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:145623000-145667800	Strong transcription	Dnd41	blood
13	chr5:145624800-145665200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:145628200-145669000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:145628600-145654400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:145630000-145653600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:145630400-145648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:145630600-145653600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:145630600-145667000	Strong transcription	Fetal Thymus	thymus
20	chr5:145630600-145667400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr5:145630800-145658800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:145630800-145667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:145630800-145668400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr5:145630800-145669600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:145631000-145645800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:145631000-145668400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:145631200-145643200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:145631200-145643600	Strong transcription	Primary B cells from cord blood	blood
29	chr5:145631200-145644000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr5:145631200-145653800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr5:145631200-145654000	Strong transcription	Placenta	Placenta
32	chr5:145631200-145654600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:145631200-145654600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr5:145631200-145657000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:145631200-145657800	Strong transcription	Adipose Nuclei	Adipose
36	chr5:145631200-145662600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:145631200-145669000	Strong transcription	Liver	Liver
38	chr5:145632800-145643400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:145632800-145653800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr5:145633000-145669400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:145633200-145643600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:145633200-145655200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr5:145633600-145653400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:145633800-145667200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr5:145634400-145643400	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr5:145634400-145644000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr5:145634400-145654000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr5:145635000-145644400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:145635000-145653200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:145635400-145643400	Strong transcription	Fetal Muscle Leg	muscle

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