Variant report

Variant	rs17429180
Chromosome Location	chr5:145598283-145598284
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145591065..145593762-chr5:145596165..145598951,2	K562	blood:
2	chr5:145582359..145584728-chr5:145597576..145599110,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091009	Chromatin interaction

Extended variants
information (count: 253 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:241)

rs_ID	r²[population]
rs10491259	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs10491260	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10491261	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10515564	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs10515565	0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs10515566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1054020	1.00[CHB][hapmap]
rs1115080	0.82[ASN][1000 genomes]
rs11167932	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11167936	0.84[ASN][1000 genomes]
rs11167937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11540215	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11948016	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11948314	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11949351	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11950903	0.86[ASN][1000 genomes]
rs11952445	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953090	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11953517	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs11954083	0.82[CEU][hapmap]
rs11954297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11954750	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11954977	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11955206	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11955557	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11957830	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11957888	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11957907	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11957998	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11958136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11958216	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11958633	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11960510	0.86[CEU][hapmap]
rs12152830	0.83[ASN][1000 genomes]
rs12153109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs12153364	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12186358	1.00[CHB][hapmap]
rs12187277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12187913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[TSI][hapmap]
rs12188581	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs12188772	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12189077	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189385	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12374457	0.85[JPT][hapmap];0.82[MEX][hapmap]
rs12374538	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs13153675	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs13153891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13154219	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13154735	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13155119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13157279	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13157784	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13159380	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13160605	0.82[ASN][1000 genomes]
rs13160905	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13161036	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13161075	0.93[CHB][hapmap]
rs13161488	0.84[ASN][1000 genomes]
rs13161659	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13162175	0.86[ASN][1000 genomes]
rs13164872	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13168967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13169390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13171596	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13171939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13173347	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13173462	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13175587	0.84[ASN][1000 genomes]
rs13176784	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13176915	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13177015	0.90[ASN][1000 genomes]
rs13178370	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13178443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13178516	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13178755	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13178840	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13179296	0.86[ASN][1000 genomes]
rs13179517	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13180255	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13181074	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13182302	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13182567	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs13182948	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13183541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13183976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13185518	0.82[ASN][1000 genomes]
rs13185586	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13186694	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13186701	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1368345	0.83[ASN][1000 genomes]
rs1395277	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1506431	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1567057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17096590	0.82[ASN][1000 genomes]
rs17212373	0.82[CEU][hapmap]
rs17426775	1.00[ASW][hapmap]
rs17427286	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs17427691	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17428100	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17428465	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17428570	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs17428647	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17428724	1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17443315	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17492851	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs17492893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs17492950	1.00[CHB][hapmap]
rs17493090	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17500483	1.00[CHB][hapmap]
rs17500504	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs17500927	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17501177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17502157	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17502233	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17502345	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17687490	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17796852	0.86[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap]
rs17796858	0.82[CEU][hapmap]
rs17796864	0.82[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs17796870	0.82[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs1864948	0.83[ASN][1000 genomes]
rs1876189	0.86[ASN][1000 genomes]
rs1911112	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1911113	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2014462	0.83[ASN][1000 genomes]
rs2014469	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2014473	0.83[ASN][1000 genomes]
rs2024055	0.82[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2024057	0.82[CEU][hapmap]
rs2053045	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2063005	0.92[CHB][hapmap]
rs2116749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2279895	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2302036	0.82[CEU][hapmap]
rs2304032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2400209	0.92[CHB][hapmap]
rs2400211	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2895647	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2895648	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2895649	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2939523	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2939533	0.84[ASN][1000 genomes]
rs2939535	0.84[ASN][1000 genomes]
rs2939536	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2962502	1.00[CHB][hapmap]
rs2962511	1.00[CHB][hapmap]
rs2962515	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2963914	1.00[CHB][hapmap]
rs2963915	1.00[CHB][hapmap]
rs2963919	1.00[CHB][hapmap]
rs2963921	1.00[CHB][hapmap]
rs2963926	0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs33914983	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34014355	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34082425	0.98[ASN][1000 genomes]
rs34141601	0.99[ASN][1000 genomes]
rs34170515	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs34405762	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34444119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34519824	0.85[ASN][1000 genomes]
rs34533649	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34775587	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34812645	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34819107	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34993855	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35048686	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35142541	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35170264	0.94[ASN][1000 genomes]
rs35369194	0.80[ASN][1000 genomes]
rs35421100	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35575652	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35870798	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35935643	0.99[ASN][1000 genomes]
rs35947468	0.93[ASN][1000 genomes]
rs36019024	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3749994	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs3763373	0.86[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs3797628	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap]
rs3822623	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3828935	0.92[CHB][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs3937558	0.83[ASN][1000 genomes]
rs41338847	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs4413574	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4443471	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4705156	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4705157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705445	0.86[ASN][1000 genomes]
rs4913064	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs55665974	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55726586	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55799797	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55909935	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55937908	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56240028	0.86[ASN][1000 genomes]
rs56338615	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56410805	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56413906	0.82[ASN][1000 genomes]
rs58848845	0.90[ASN][1000 genomes]
rs62372766	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62372767	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62372768	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62372769	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62372772	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62372773	0.93[ASN][1000 genomes]
rs62373809	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62373810	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62373811	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62373812	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62373813	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62373819	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62373824	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62373831	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580413	0.83[ASN][1000 genomes]
rs6867146	0.93[ASN][1000 genomes]
rs6868728	0.83[ASN][1000 genomes]
rs6870878	0.82[ASN][1000 genomes]
rs6877277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs6878005	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6881180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6882517	0.97[ASN][1000 genomes]
rs6884493	0.93[ASN][1000 genomes]
rs6893994	0.82[ASN][1000 genomes]
rs71594528	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7443214	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7702123	0.91[ASN][1000 genomes]
rs7703269	0.91[ASN][1000 genomes]
rs7711896	0.86[ASN][1000 genomes]
rs7722258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7724811	0.93[ASN][1000 genomes]
rs7727353	0.94[ASN][1000 genomes]
rs7728381	1.00[CHB][hapmap]
rs7729098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9918101	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9918130	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883008	chr5:145509728-145642925	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv883009	chr5:145567877-145672431	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv462475	chr5:145583623-145642007	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv599935	chr5:145583623-145642007	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv883010	chr5:145583623-145651979	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv883011	chr5:145583623-145672431	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv523502	chr5:145588483-145639987	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv883012	chr5:145589542-145672431	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
12	nsv883013	chr5:145595837-145651979	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17429180	LARS	cis	Nerve Tibial	GTEx
rs17429180	LARS	cis	Artery Tibial	GTEx
rs17429180	LARS	cis	Esophagus Muscularis	GTEx
rs17429180	LARS	cis	Thyroid	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145584400-145598800	Weak transcription	NH-A	brain
2	chr5:145584400-145606600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:145584600-145606400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:145584800-145599000	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:145584800-145608000	Weak transcription	Esophagus	oesophagus
6	chr5:145584800-145631200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:145585000-145598800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:145585000-145599000	Weak transcription	Fetal Brain Female	brain
9	chr5:145585000-145602600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:145585200-145598600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:145585200-145598600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:145585200-145598800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:145585200-145598800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:145585200-145598800	Weak transcription	HMEC	breast
15	chr5:145585200-145598800	Weak transcription	NHEK	skin
16	chr5:145585200-145609200	Weak transcription	Brain Anterior Caudate	brain
17	chr5:145585400-145598400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:145585400-145609000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:145585600-145599000	Weak transcription	Thymus	Thymus
20	chr5:145585600-145599200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:145585600-145601000	Weak transcription	Right Atrium	heart
22	chr5:145585600-145610200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:145585800-145598400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:145585800-145598800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:145585800-145601800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:145586000-145599000	Weak transcription	HSMM	muscle
27	chr5:145586400-145598800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:145586400-145604000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:145586400-145616800	Weak transcription	Right Ventricle	heart
30	chr5:145586800-145598600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr5:145588200-145599000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:145588200-145608000	Weak transcription	Gastric	stomach
33	chr5:145588200-145609200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:145589000-145633200	Weak transcription	Brain Angular Gyrus	brain
35	chr5:145589200-145599000	Weak transcription	Aorta	Aorta
36	chr5:145589200-145615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr5:145589400-145599000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:145589400-145610200	Weak transcription	Fetal Kidney	kidney
39	chr5:145589600-145598800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr5:145589600-145599000	Weak transcription	Fetal Intestine Large	intestine
41	chr5:145589600-145606200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:145589600-145611600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:145589800-145599000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:145590000-145599000	Weak transcription	Fetal Stomach	stomach
45	chr5:145590800-145599400	Weak transcription	Fetal Intestine Small	intestine
46	chr5:145591400-145599200	Weak transcription	Left Ventricle	heart
47	chr5:145592600-145598600	Weak transcription	Osteobl	bone
48	chr5:145593200-145598400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:145593200-145598800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:145593200-145615400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links