Variant report

Variant	rs11954297
Chromosome Location	chr5:145668298-145668299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145661955..145664023-chr5:145664235..145668387,3	K562	blood:

Extended variants
information (count: 234 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10491259	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs10491260	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10491261	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10515564	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs10515565	0.82[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs10515566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10515567	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1054020	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1115080	0.89[ASN][1000 genomes]
rs11167932	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11167937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540215	0.87[AMR][1000 genomes]
rs11948016	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11948314	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11949351	0.87[AMR][1000 genomes]
rs11950903	0.81[ASN][1000 genomes]
rs11952445	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953090	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11953517	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs11954083	0.82[CEU][hapmap]
rs11954750	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11954977	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11955206	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955557	0.82[AMR][1000 genomes]
rs11957830	0.86[AMR][1000 genomes]
rs11957888	0.87[AMR][1000 genomes]
rs11957907	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11957998	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11958136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11958216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11958633	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12152830	0.90[ASN][1000 genomes]
rs12153109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12153364	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12186358	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs12187277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12187913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.92[TSI][hapmap]
rs12188581	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12188772	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12189077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189385	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13153675	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs13153891	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13154219	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13154735	0.87[AMR][1000 genomes]
rs13155119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13157279	0.87[AMR][1000 genomes]
rs13157784	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13159380	0.87[AMR][1000 genomes]
rs13160605	0.89[ASN][1000 genomes]
rs13160905	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13161036	0.87[AMR][1000 genomes]
rs13161075	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs13161659	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13162175	0.81[ASN][1000 genomes]
rs13164872	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13168967	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13169370	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13169390	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13171596	0.87[AMR][1000 genomes]
rs13171939	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13173347	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13173462	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13176784	0.85[AMR][1000 genomes]
rs13176915	0.87[AMR][1000 genomes]
rs13177015	0.97[ASN][1000 genomes]
rs13178370	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13178443	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13178516	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13178755	0.87[AMR][1000 genomes]
rs13178840	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13179296	0.81[ASN][1000 genomes]
rs13179517	0.87[AMR][1000 genomes]
rs13180255	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181074	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13182302	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13182567	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13182948	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13183541	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13183976	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13185518	0.87[ASN][1000 genomes]
rs13185586	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13186694	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13186701	0.87[AMR][1000 genomes]
rs1368345	0.90[ASN][1000 genomes]
rs1395277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1506431	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1567057	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17096590	0.87[ASN][1000 genomes]
rs17427286	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17427691	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428100	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428465	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428570	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17428647	0.87[AMR][1000 genomes]
rs17428724	1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes]
rs17429180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17443315	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17492851	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492950	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17493090	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17500483	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs17500504	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17500927	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17501177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17501601	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17502157	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17502345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17687490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1864948	0.90[ASN][1000 genomes]
rs1876189	0.81[ASN][1000 genomes]
rs1911112	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1911113	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2014462	0.90[ASN][1000 genomes]
rs2014469	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014473	0.90[ASN][1000 genomes]
rs2053045	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2063005	0.92[CHB][hapmap];0.83[CHD][hapmap]
rs2116749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2279895	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2302036	0.82[CEU][hapmap]
rs2304032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400209	0.92[CHB][hapmap]
rs2400211	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895647	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2895648	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895649	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2939523	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2939536	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2962502	1.00[CHB][hapmap]
rs2962511	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2962515	0.82[AMR][1000 genomes]
rs2963914	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2963915	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs2963919	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs2963921	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs2963926	0.84[JPT][hapmap];1.00[ASN][1000 genomes]
rs33914983	0.87[AMR][1000 genomes]
rs34014355	0.87[AMR][1000 genomes]
rs34082425	0.95[ASN][1000 genomes]
rs34141601	0.94[ASN][1000 genomes]
rs34170515	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs34405762	0.85[AMR][1000 genomes]
rs34444119	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34519824	0.80[ASN][1000 genomes]
rs34533649	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34775587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812645	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34819107	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34993855	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35048686	0.87[AMR][1000 genomes]
rs35142541	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35170264	0.89[ASN][1000 genomes]
rs35369194	0.85[ASN][1000 genomes]
rs35421100	0.87[AMR][1000 genomes]
rs35575652	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728795	0.84[ASN][1000 genomes]
rs35870798	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35935643	0.94[ASN][1000 genomes]
rs35947468	1.00[ASN][1000 genomes]
rs36019024	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3749994	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs3763373	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs3797628	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap]
rs3822623	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3828935	0.82[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap]
rs3937558	0.90[ASN][1000 genomes]
rs41338847	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs4413574	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes]
rs4443471	0.87[AMR][1000 genomes]
rs4705156	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4705157	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705179	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705445	0.81[ASN][1000 genomes]
rs4913064	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs55665974	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55726586	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55799797	0.87[AMR][1000 genomes]
rs55909935	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55937908	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56240028	0.81[ASN][1000 genomes]
rs56338615	0.87[AMR][1000 genomes]
rs56410805	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56413906	0.87[ASN][1000 genomes]
rs58848845	0.97[ASN][1000 genomes]
rs62372766	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62372767	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62372768	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372769	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372772	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372773	1.00[ASN][1000 genomes]
rs62373809	0.81[AMR][1000 genomes]
rs62373810	0.81[AMR][1000 genomes]
rs62373811	0.84[AMR][1000 genomes]
rs62373812	0.87[AMR][1000 genomes]
rs62373813	0.87[AMR][1000 genomes]
rs62373819	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62373824	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62373831	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580413	0.90[ASN][1000 genomes]
rs6867146	1.00[ASN][1000 genomes]
rs6868728	0.90[ASN][1000 genomes]
rs6870878	0.87[ASN][1000 genomes]
rs6877277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6878005	0.82[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6881180	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6882517	0.92[ASN][1000 genomes]
rs6884493	1.00[ASN][1000 genomes]
rs6893994	0.87[ASN][1000 genomes]
rs71594528	0.87[AMR][1000 genomes]
rs7443214	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7702123	0.98[ASN][1000 genomes]
rs7703269	0.98[ASN][1000 genomes]
rs7711896	0.81[ASN][1000 genomes]
rs7722258	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7724811	1.00[ASN][1000 genomes]
rs7727353	0.89[ASN][1000 genomes]
rs7728381	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap]
rs7729098	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9918101	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs9918130	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883009	chr5:145567877-145672431	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv883011	chr5:145583623-145672431	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv883012	chr5:145589542-145672431	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11954297	LARS	cis	Thyroid	GTEx
rs11954297	LARS	cis	Artery Tibial	GTEx
rs11954297	LARS	cis	parietal	SCAN
rs11954297	LARS	cis	Esophagus Muscularis	GTEx
rs11954297	LARS	cis	Nerve Tibial	GTEx
rs11954297	LARS	cis	cerebellum	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145597000-145668400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:145611200-145670600	Weak transcription	Small Intestine	intestine
3	chr5:145628200-145669000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:145630800-145668400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr5:145630800-145669600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:145631000-145668400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:145631200-145669000	Strong transcription	Liver	Liver
8	chr5:145633000-145669400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:145641600-145670600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:145649200-145676200	Weak transcription	Fetal Brain Male	brain
11	chr5:145652800-145672400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:145653000-145668600	Weak transcription	Brain Anterior Caudate	brain
13	chr5:145655200-145669200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr5:145656400-145669600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:145657800-145676000	Weak transcription	Brain Substantia Nigra	brain
16	chr5:145659800-145669000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:145660200-145668400	Strong transcription	Placenta	Placenta
18	chr5:145661400-145668400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:145662000-145668800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:145662600-145668600	Weak transcription	Fetal Lung	lung
21	chr5:145663200-145668600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:145663200-145669800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:145663200-145669800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:145663200-145669800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:145663200-145671000	Weak transcription	Left Ventricle	heart
26	chr5:145663200-145674400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:145663200-145674600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:145663400-145669600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:145663400-145671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:145663600-145668600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr5:145663600-145669800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:145663600-145669800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr5:145663600-145671200	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:145663800-145668400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:145663800-145668600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:145663800-145670200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:145664000-145670000	Weak transcription	HSMMtube	muscle
38	chr5:145664200-145669800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:145664200-145672000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:145664400-145672000	Weak transcription	NHEK	skin
41	chr5:145665000-145669000	Strong transcription	HSMM	muscle
42	chr5:145665800-145672600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:145666000-145669600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:145666600-145668400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr5:145666600-145668400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:145666600-145677000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr5:145666800-145669800	Weak transcription	Osteobl	bone
48	chr5:145667000-145668600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr5:145667000-145668800	Weak transcription	Fetal Kidney	kidney
50	chr5:145667000-145669800	Weak transcription	H1 Cell Line	embryonic stem cell

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