The 2.0 version of rSNPBase

Variant report

Variant rs34141601
Chromosome Location chr5:145590248-145590249
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145584400-145598800 Weak transcription NH-A brain
2 chr5:145584400-145606600 Weak transcription Brain Inferior Temporal Lobe brain
3 chr5:145584600-145595600 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr5:145584600-145606400 Weak transcription Stomach Smooth Muscle stomach
5 chr5:145584800-145597200 Weak transcription Fetal Muscle Trunk muscle
6 chr5:145584800-145599000 Weak transcription Fetal Muscle Leg muscle
7 chr5:145584800-145608000 Weak transcription Esophagus oesophagus
8 chr5:145584800-145631200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr5:145585000-145590600 Weak transcription Left Ventricle heart
10 chr5:145585000-145593000 Weak transcription Brain Substantia Nigra brain
11 chr5:145585000-145593600 Weak transcription Fetal Lung lung
12 chr5:145585000-145598800 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr5:145585000-145599000 Weak transcription Fetal Brain Female brain
14 chr5:145585000-145602600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr5:145585200-145592800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:145585200-145593000 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr5:145585200-145593000 Weak transcription Primary hematopoietic stem cells blood
18 chr5:145585200-145593000 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr5:145585200-145598600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr5:145585200-145598600 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr5:145585200-145598800 Weak transcription H1 Cell Line embryonic stem cell
22 chr5:145585200-145598800 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr5:145585200-145598800 Weak transcription HMEC breast
24 chr5:145585200-145598800 Weak transcription NHEK skin
25 chr5:145585200-145609200 Weak transcription Brain Anterior Caudate brain
26 chr5:145585400-145597400 Weak transcription Primary monocytes fromperipheralblood blood
27 chr5:145585400-145598200 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr5:145585400-145598200 Weak transcription HUVEC blood vessel
29 chr5:145585400-145598400 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr5:145585400-145609000 Weak transcription Brain Cingulate Gyrus brain
31 chr5:145585600-145597400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr5:145585600-145599000 Weak transcription Thymus Thymus
33 chr5:145585600-145599200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr5:145585600-145601000 Weak transcription Right Atrium heart
35 chr5:145585600-145610200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr5:145585800-145598400 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr5:145585800-145598800 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr5:145585800-145601800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr5:145586000-145599000 Weak transcription HSMM muscle
40 chr5:145586200-145597000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr5:145586400-145594600 Weak transcription Lung lung
42 chr5:145586400-145595600 Weak transcription Pancreas Pancrea
43 chr5:145586400-145598800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr5:145586400-145604000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr5:145586400-145616800 Weak transcription Right Ventricle heart
46 chr5:145586600-145592800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr5:145586800-145593000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr5:145586800-145598600 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr5:145587000-145597400 Weak transcription Psoas Muscle Psoas
50 chr5:145587800-145590800 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015