Variant report
| Variant | rs2939535 |
|---|---|
| Chromosome Location | chr5:145554549-145554550 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:145481200-145560200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:145491000-145560200 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 3 | chr5:145491200-145560200 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 4 | chr5:145491200-145560200 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 5 | chr5:145491200-145560800 | Weak transcription | Stomach Mucosa | stomach |
| 6 | chr5:145491400-145560000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 7 | chr5:145491400-145560400 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 8 | chr5:145491600-145557000 | Strong transcription | Primary T helper cells fromperipheralblood | blood |
| 9 | chr5:145491600-145559800 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 10 | chr5:145492200-145560200 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 11 | chr5:145495800-145559200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 12 | chr5:145499000-145557400 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 13 | chr5:145511600-145556800 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 14 | chr5:145515800-145557400 | Strong transcription | Liver | Liver |
| 15 | chr5:145519200-145558200 | Strong transcription | Dnd41 | blood |
| 16 | chr5:145532200-145559600 | Weak transcription | Small Intestine | intestine |
| 17 | chr5:145532200-145561000 | Weak transcription | Esophagus | oesophagus |
| 18 | chr5:145535200-145559600 | Strong transcription | Fetal Muscle Leg | muscle |
| 19 | chr5:145535600-145559600 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 20 | chr5:145537800-145560800 | Weak transcription | Fetal Heart | heart |
| 21 | chr5:145541000-145560400 | Weak transcription | Right Atrium | heart |
| 22 | chr5:145542400-145556000 | Strong transcription | Fetal Muscle Trunk | muscle |
| 23 | chr5:145542600-145559600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 24 | chr5:145542600-145560200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 25 | chr5:145542600-145560400 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 26 | chr5:145542600-145560600 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 27 | chr5:145542800-145559600 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 28 | chr5:145542800-145561200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 29 | chr5:145543000-145560200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 30 | chr5:145543600-145560400 | Weak transcription | Brain Angular Gyrus | brain |
| 31 | chr5:145544000-145560400 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 32 | chr5:145544000-145560400 | Weak transcription | Psoas Muscle | Psoas |
| 33 | chr5:145544600-145559400 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 34 | chr5:145545600-145557400 | Strong transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 35 | chr5:145545800-145557800 | Strong transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 36 | chr5:145546200-145558200 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 37 | chr5:145546200-145560200 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 38 | chr5:145546200-145560400 | Weak transcription | Pancreas | Pancrea |
| 39 | chr5:145546400-145558800 | Weak transcription | Brain Germinal Matrix | brain |
| 40 | chr5:145546800-145559000 | Weak transcription | Fetal Brain Male | brain |
| 41 | chr5:145547000-145561000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 42 | chr5:145547200-145557400 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 43 | chr5:145547600-145556400 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 44 | chr5:145547800-145558600 | Strong transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 45 | chr5:145548000-145559600 | Strong transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 46 | chr5:145548000-145561000 | Weak transcription | NHLF | lung |
| 47 | chr5:145549400-145557600 | Strong transcription | Fetal Adrenal Gland | Adrenal Gland |
| 48 | chr5:145549600-145556400 | Strong transcription | HSMM | muscle |
| 49 | chr5:145550000-145561000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 50 | chr5:145550400-145561000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
