Variant report

Variant	rs56338615
Chromosome Location	chr5:145560349-145560350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:145559594..145562426-chr5:145581996..145584629,4	MCF-7	breast:
2	chr5:145559745..145561849-chr5:145588233..145589890,2	K562	blood:
3	chr5:145558307..145563846-chr5:145580315..145584343,10	K562	blood:
4	chr5:145555213..145560576-chr5:145560598..145562206,4	K562	blood:
5	chr5:145543973..145545500-chr5:145559065..145562026,2	K562	blood:
6	chr5:145559635..145562318-chr5:145826820..145828574,2	K562	blood:
7	chr5:145559635..145563527-chr5:145825770..145828320,3	K562	blood:
8	chr5:145558240..145560527-chr5:145600863..145603054,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000091009	Chromatin interaction
ENSG00000113649	Chromatin interaction
ENSG00000133706	Chromatin interaction

Extended variants
information (count: 362 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:357)

rs_ID	r²[population]
rs10491259	0.89[EUR][1000 genomes]
rs10491260	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10491261	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10515564	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10515565	0.81[ASN][1000 genomes]
rs10515566	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10515567	0.87[AMR][1000 genomes]
rs1054020	0.88[ASN][1000 genomes]
rs10988	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11167931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11167932	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167933	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167934	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11167936	1.00[ASN][1000 genomes]
rs11167937	0.87[AMR][1000 genomes]
rs11540214	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11540215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540217	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948016	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948180	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948314	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11949351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949352	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11949703	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11950903	0.98[ASN][1000 genomes]
rs11951553	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11952228	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11952281	0.80[EUR][1000 genomes]
rs11952445	0.85[AMR][1000 genomes]
rs11952697	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11953090	0.85[AMR][1000 genomes]
rs11953506	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11953517	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11953586	0.89[EUR][1000 genomes]
rs11954083	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954297	0.87[AMR][1000 genomes]
rs11954750	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954870	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954923	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954977	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11955206	0.85[AMR][1000 genomes]
rs11955443	0.82[ASN][1000 genomes]
rs11955557	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11955635	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11955695	0.83[EUR][1000 genomes]
rs11956508	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11957830	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957907	0.86[AMR][1000 genomes]
rs11957998	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958216	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11958630	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11958633	0.86[AMR][1000 genomes]
rs11959805	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11960510	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12153109	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12153238	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153364	0.85[AMR][1000 genomes]
rs12186358	0.84[ASN][1000 genomes]
rs12186642	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12187128	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12187277	0.82[ASN][1000 genomes]
rs12187649	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12187913	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12188581	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12188772	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188941	0.90[EUR][1000 genomes]
rs12189077	0.87[AMR][1000 genomes]
rs12189385	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12374516	0.88[EUR][1000 genomes]
rs12374539	0.87[EUR][1000 genomes]
rs13153675	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13153891	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13154219	0.85[AMR][1000 genomes]
rs13154547	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13154735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155119	0.85[AMR][1000 genomes]
rs13157279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157784	0.84[AMR][1000 genomes]
rs13159380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160905	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13161036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161075	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161488	1.00[ASN][1000 genomes]
rs13161659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13162175	0.98[ASN][1000 genomes]
rs13162233	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13162640	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13164872	0.86[AMR][1000 genomes]
rs13164882	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13168967	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13169370	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13169390	0.90[AMR][1000 genomes]
rs13171596	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171828	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13171939	0.85[ASN][1000 genomes]
rs13172010	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13173347	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13173462	0.89[AMR][1000 genomes]
rs13174055	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13175587	1.00[ASN][1000 genomes]
rs13175806	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13176784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178370	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178443	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13178516	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13178755	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178840	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13179296	0.98[ASN][1000 genomes]
rs13179517	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180113	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13180255	0.86[AMR][1000 genomes]
rs13181074	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13181077	0.85[EUR][1000 genomes]
rs13182302	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13182567	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13182838	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13182948	0.86[AMR][1000 genomes]
rs13183541	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13183976	0.84[ASN][1000 genomes]
rs13184702	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13185586	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185805	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13186694	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13186701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395276	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1395277	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506431	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104255	0.86[ASN][1000 genomes]
rs17212373	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17212380	0.88[EUR][1000 genomes]
rs17426845	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17427286	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17427691	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428100	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428465	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428570	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17428647	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17428724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429180	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17443315	0.84[AMR][1000 genomes]
rs17492851	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17492893	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17492950	0.86[ASN][1000 genomes]
rs17493090	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17493851	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500456	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500483	0.88[ASN][1000 genomes]
rs17500504	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17500927	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501177	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17501601	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17502157	0.84[AMR][1000 genomes]
rs17502233	0.87[AMR][1000 genomes]
rs17502345	0.87[AMR][1000 genomes]
rs17687490	0.87[AMR][1000 genomes]
rs17796852	0.89[EUR][1000 genomes]
rs17796858	0.89[EUR][1000 genomes]
rs17796864	0.89[EUR][1000 genomes]
rs17796870	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17796876	0.89[EUR][1000 genomes]
rs1876189	0.98[ASN][1000 genomes]
rs1911112	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1911113	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985600	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2014469	0.85[AMR][1000 genomes]
rs2015248	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2024055	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2024057	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2053045	0.89[AMR][1000 genomes]
rs2063002	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063005	0.88[ASN][1000 genomes]
rs2240524	0.88[EUR][1000 genomes]
rs2279895	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2292172	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292173	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2302036	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2304032	0.86[AMR][1000 genomes]
rs2304033	0.85[AMR][1000 genomes]
rs2400209	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2400211	0.86[EUR][1000 genomes]
rs2895647	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895648	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895649	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2895650	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2939527	0.81[EUR][1000 genomes]
rs2939533	1.00[ASN][1000 genomes]
rs2939535	1.00[ASN][1000 genomes]
rs2939536	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2939539	0.88[ASN][1000 genomes]
rs2962502	0.83[ASN][1000 genomes]
rs2962503	0.88[ASN][1000 genomes]
rs2962509	0.88[ASN][1000 genomes]
rs2962510	0.85[ASN][1000 genomes]
rs2962511	0.88[ASN][1000 genomes]
rs2962515	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962540	0.83[AFR][1000 genomes]
rs2962541	0.83[AFR][1000 genomes]
rs2963914	0.88[ASN][1000 genomes]
rs2963915	0.88[ASN][1000 genomes]
rs2963918	0.88[ASN][1000 genomes]
rs2963919	0.86[ASN][1000 genomes]
rs2963920	0.86[ASN][1000 genomes]
rs2963921	0.88[ASN][1000 genomes]
rs2963922	0.88[ASN][1000 genomes]
rs2963923	0.88[ASN][1000 genomes]
rs2963924	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33914983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34014355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34049009	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34071526	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34078408	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34082425	0.82[ASN][1000 genomes]
rs34141601	0.85[ASN][1000 genomes]
rs34160255	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34170515	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34272709	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34342344	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34345997	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34404385	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34405762	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34444119	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34461274	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34482773	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34516108	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34519824	0.99[ASN][1000 genomes]
rs34529192	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34530601	0.89[EUR][1000 genomes]
rs34533649	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34581962	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34601905	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34672485	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34683303	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34774165	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34775587	0.87[AMR][1000 genomes]
rs34794113	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34794547	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34812645	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34818573	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34818690	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34819107	0.85[AMR][1000 genomes]
rs34848484	0.88[EUR][1000 genomes]
rs34993855	0.83[AMR][1000 genomes]
rs35048100	0.88[ASN][1000 genomes]
rs35048686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35142541	0.86[AMR][1000 genomes]
rs35150639	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35170264	0.82[ASN][1000 genomes]
rs35185759	0.83[EUR][1000 genomes]
rs35228139	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35238125	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35262581	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35283996	0.84[EUR][1000 genomes]
rs35421100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35421875	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35424128	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35436549	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35575652	0.85[AMR][1000 genomes]
rs35581472	0.81[EUR][1000 genomes]
rs35652702	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35658996	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35676277	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35749752	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35801832	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35821418	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35825928	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35868039	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35869904	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35917756	0.89[EUR][1000 genomes]
rs35935643	0.85[ASN][1000 genomes]
rs36019024	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs36059140	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36095232	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36098188	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36102990	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36122632	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3749994	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3763373	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3797626	0.89[EUR][1000 genomes]
rs3797627	0.89[EUR][1000 genomes]
rs3797628	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3822623	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828935	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41338847	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4413574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705119	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705157	0.90[AMR][1000 genomes]
rs4705179	0.86[AMR][1000 genomes]
rs4705398	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705438	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705445	0.98[ASN][1000 genomes]
rs4913061	0.88[EUR][1000 genomes]
rs4913062	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4913063	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4913064	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4913065	0.82[ASN][1000 genomes]
rs4913066	0.82[ASN][1000 genomes]
rs4913067	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55665974	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55681213	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55681251	0.86[EUR][1000 genomes]
rs55726586	0.85[AMR][1000 genomes]
rs55782203	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55799797	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55812375	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55874924	0.88[EUR][1000 genomes]
rs55909935	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55937908	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56240028	0.98[ASN][1000 genomes]
rs56278005	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56393319	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56410805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372766	0.84[AMR][1000 genomes]
rs62372768	0.86[AMR][1000 genomes]
rs62372769	0.85[AMR][1000 genomes]
rs62372772	0.85[AMR][1000 genomes]
rs62373771	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62373773	0.88[EUR][1000 genomes]
rs62373774	0.88[EUR][1000 genomes]
rs62373785	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373786	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373789	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373798	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373799	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62373801	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373802	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62373809	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373810	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373811	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373813	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62373819	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373823	0.92[ASN][1000 genomes]
rs62373824	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62373831	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66538287	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67051761	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67598659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67829086	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs67986716	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68022863	0.84[EUR][1000 genomes]
rs6861532	0.93[ASN][1000 genomes]
rs6877277	0.89[EUR][1000 genomes]
rs6878005	0.81[ASN][1000 genomes]
rs6881180	0.86[ASN][1000 genomes]
rs6882517	0.85[ASN][1000 genomes]
rs71594528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72822286	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443214	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711896	0.98[ASN][1000 genomes]
rs7727353	0.88[ASN][1000 genomes]
rs7728381	0.84[ASN][1000 genomes]
rs7728631	0.82[ASN][1000 genomes]
rs9918101	0.98[ASN][1000 genomes]
rs9918130	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883008	chr5:145509728-145642925	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3348501	chr5:145543808-145572250	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs56338615	LARS	cis	Thyroid	GTEx
rs56338615	LARS	cis	Nerve Tibial	GTEx
rs56338615	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs56338615	LARS	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145491200-145560800	Weak transcription	Stomach Mucosa	stomach
2	chr5:145491400-145560400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:145532200-145561000	Weak transcription	Esophagus	oesophagus
4	chr5:145537800-145560800	Weak transcription	Fetal Heart	heart
5	chr5:145541000-145560400	Weak transcription	Right Atrium	heart
6	chr5:145542600-145560400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:145542600-145560600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:145542800-145561200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:145543600-145560400	Weak transcription	Brain Angular Gyrus	brain
10	chr5:145544000-145560400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:145544000-145560400	Weak transcription	Psoas Muscle	Psoas
12	chr5:145546200-145560400	Weak transcription	Pancreas	Pancrea
13	chr5:145547000-145561000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:145548000-145561000	Weak transcription	NHLF	lung
15	chr5:145550000-145561000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:145550400-145561000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:145550600-145560400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:145550600-145561000	Weak transcription	Colonic Mucosa	Colon
19	chr5:145550600-145561600	Weak transcription	Aorta	Aorta
20	chr5:145550600-145561600	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:145550800-145560400	Weak transcription	Right Ventricle	heart
22	chr5:145550800-145560400	Weak transcription	Spleen	Spleen
23	chr5:145550800-145560600	Weak transcription	Ovary	ovary
24	chr5:145550800-145561000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:145550800-145561000	Weak transcription	Fetal Kidney	kidney
26	chr5:145550800-145561000	Weak transcription	Fetal Lung	lung
27	chr5:145550800-145561000	Weak transcription	HSMMtube	muscle
28	chr5:145551000-145560400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:145551600-145560400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:145551600-145561000	Weak transcription	Brain Substantia Nigra	brain
31	chr5:145551800-145560400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr5:145551800-145561000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr5:145551800-145561000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:145552600-145561000	Strong transcription	Fetal Stomach	stomach
35	chr5:145553400-145560400	Weak transcription	HUVEC	blood vessel
36	chr5:145553600-145560400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:145553600-145560800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:145553600-145561000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr5:145553800-145560400	Strong transcription	Fetal Intestine Small	intestine
40	chr5:145554800-145561200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:145555200-145560400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:145555800-145560600	Weak transcription	Lung	lung
43	chr5:145555800-145561000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:145555800-145561000	Weak transcription	Fetal Intestine Large	intestine
45	chr5:145556200-145560800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr5:145556400-145560400	Weak transcription	Brain Anterior Caudate	brain
47	chr5:145556400-145560400	Weak transcription	HSMM	muscle
48	chr5:145556400-145561000	Weak transcription	Placenta	Placenta
49	chr5:145556800-145560400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:145556800-145560400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links