Variant report

Variant rs12374516
Chromosome Location chr5:145453573-145453574
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145429600-145459600 Weak transcription Stomach Mucosa stomach
2 chr5:145442400-145461200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:145443200-145458000 Weak transcription Liver Liver
4 chr5:145443600-145461000 Weak transcription Colonic Mucosa Colon
5 chr5:145447400-145455000 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:145447600-145455400 Weak transcription Fetal Intestine Large intestine
7 chr5:145448000-145460000 Weak transcription Fetal Intestine Small intestine
8 chr5:145448200-145455600 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr5:145448400-145458000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr5:145448600-145455800 Weak transcription Duodenum Mucosa Duodenum
11 chr5:145449800-145454200 Enhancers Left Ventricle heart
12 chr5:145450000-145458600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr5:145450600-145461000 Weak transcription Right Atrium heart
14 chr5:145451000-145459800 Weak transcription Esophagus oesophagus
15 chr5:145451600-145458200 Weak transcription NHEK skin
16 chr5:145451800-145456800 Enhancers Fetal Heart heart
17 chr5:145451800-145459000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:145451800-145459000 Weak transcription HMEC breast
19 chr5:145451800-145460000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:145451800-145460600 Weak transcription Aorta Aorta
21 chr5:145452200-145459400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
22 chr5:145452400-145454000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
23 chr5:145452600-145453600 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
24 chr5:145452600-145453600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
25 chr5:145452800-145453600 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
26 chr5:145452800-145453600 Bivalent Enhancer Fetal Lung lung
27 chr5:145453000-145454200 Enhancers H1 Cell Line embryonic stem cell
28 chr5:145453200-145453600 Flanking Bivalent TSS/Enh ES-I3 Cell Line embryonic stem cell
29 chr5:145453200-145453600 Flanking Active TSS H9 Cell Line embryonic stem cell
30 chr5:145453200-145453600 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
31 chr5:145453200-145453600 Flanking Bivalent TSS/Enh HUES64 Cell Line embryonic stem cell
32 chr5:145453200-145453600 Flanking Bivalent TSS/Enh iPS-15b Cell Line embryonic stem cell
33 chr5:145453200-145453600 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
34 chr5:145453200-145453600 Enhancers Pancreas Pancrea
35 chr5:145453200-145453600 Enhancers Right Ventricle heart
36 chr5:145453200-145455800 Weak transcription Brain Germinal Matrix brain
37 chr5:145453400-145453600 Enhancers Psoas Muscle Psoas
38 chr5:145453400-145454800 Weak transcription Fetal Brain Female brain
39 chr5:145453400-145455600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr5:145453400-145455600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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