Variant report

Variant	rs13181077
Chromosome Location	chr5:145463595-145463596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145455712..145457745-chr5:145463209..145465504,2	MCF-7	breast:
2	chr5:145456217..145460713-chr5:145463398..145466718,4	K562	blood:

Extended variants
information (count: 236 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs1006204	0.89[ASN][1000 genomes]
rs10491259	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10491260	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10491261	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10515564	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10988	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11167931	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11167932	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11167933	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11167934	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11540214	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11540215	0.84[EUR][1000 genomes]
rs11540217	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11948180	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11948314	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11949351	0.85[EUR][1000 genomes]
rs11949352	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11949703	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11951553	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11952228	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11952281	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11952697	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11953517	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11953586	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11954083	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11954750	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11954870	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11954923	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11954977	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11955557	0.83[EUR][1000 genomes]
rs11955635	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11955695	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11956508	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11957830	0.84[EUR][1000 genomes]
rs11957888	0.85[EUR][1000 genomes]
rs11958630	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11959805	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11960510	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12153109	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12153238	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12186642	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12187128	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12187649	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12187913	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12188581	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12188941	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189385	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12374516	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12374539	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13153675	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13154547	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13154735	0.82[EUR][1000 genomes]
rs13157279	0.85[EUR][1000 genomes]
rs13159380	0.85[EUR][1000 genomes]
rs13161036	0.83[EUR][1000 genomes]
rs13161075	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13161659	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13162233	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13162640	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13164882	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13171596	0.85[EUR][1000 genomes]
rs13171828	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13172010	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174055	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13175806	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13176784	0.85[EUR][1000 genomes]
rs13176915	0.85[EUR][1000 genomes]
rs13178370	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13178516	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13178755	0.85[EUR][1000 genomes]
rs13178840	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13179517	0.85[EUR][1000 genomes]
rs13180113	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13181074	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13182302	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13182567	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13182838	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13184702	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13185805	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186694	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186701	0.84[EUR][1000 genomes]
rs1395276	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1395277	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17212373	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17212380	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17426845	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17427286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17427691	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17428100	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17428465	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17428570	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17428647	0.84[EUR][1000 genomes]
rs17428724	0.84[EUR][1000 genomes]
rs17492851	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17492893	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17493090	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17493851	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17500456	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17500504	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17796852	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17796858	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17796864	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17796870	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17796876	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1911112	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1911113	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1985600	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2015248	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2024055	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024056	0.89[ASN][1000 genomes]
rs2024057	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2240524	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2292172	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2292173	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2302036	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2400209	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2400211	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895647	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895648	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895649	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895650	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2939527	0.85[EUR][1000 genomes]
rs2939536	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2962515	0.85[EUR][1000 genomes]
rs2963924	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs33914983	0.85[EUR][1000 genomes]
rs34014355	0.85[EUR][1000 genomes]
rs34049009	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34071526	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34078408	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34160255	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34170515	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34272709	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34342344	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34345997	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34404385	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34405762	0.82[EUR][1000 genomes]
rs34461274	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34482773	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34516108	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34529192	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34530601	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34581962	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34601905	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34672485	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34683303	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34774165	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34794113	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34794547	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34818573	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34818690	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34848484	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35048686	0.86[EUR][1000 genomes]
rs35150639	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35185759	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35228139	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35238125	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35262581	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35283996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35421100	0.85[EUR][1000 genomes]
rs35421875	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35424128	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35436549	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35581472	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35652702	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35658996	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35676277	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35749752	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35801832	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35821418	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35825928	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35868039	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35869904	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35917756	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36059140	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36095232	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36098188	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36102990	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36122632	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3749994	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3763373	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3797626	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3797627	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3797628	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3822623	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3828935	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41338847	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4413574	0.84[EUR][1000 genomes]
rs4443471	0.85[EUR][1000 genomes]
rs4705119	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705398	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705438	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4913061	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4913062	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4913063	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4913064	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4913067	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55681213	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55681251	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55782203	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55799797	0.82[EUR][1000 genomes]
rs55812375	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55826688	0.83[AMR][1000 genomes]
rs55874924	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56278005	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56338615	0.85[EUR][1000 genomes]
rs56393319	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61732383	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62373771	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373773	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373774	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373785	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373786	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373789	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373795	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373798	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373799	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373801	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373802	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373809	0.85[EUR][1000 genomes]
rs62373810	0.85[EUR][1000 genomes]
rs62373811	0.84[EUR][1000 genomes]
rs62373812	0.85[EUR][1000 genomes]
rs62373813	0.85[EUR][1000 genomes]
rs6580408	0.89[ASN][1000 genomes]
rs66538287	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67051761	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67598659	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67829086	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67986716	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs68022863	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877277	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71594528	0.85[EUR][1000 genomes]
rs72820460	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72822286	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13181077	LARS	cis	Nerve Tibial	GTEx
rs13181077	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs13181077	LARS	cis	Thyroid	GTEx
rs13181077	LARS	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:145459800-145471200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:145459800-145492000	Weak transcription	HSMMtube	muscle

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