Variant report

Variant	rs17796864
Chromosome Location	chr5:145459262-145459263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145456217..145460713-chr5:145463398..145466718,4	K562	blood:
2	chr5:145455824..145457469-chr5:145458591..145461118,2	K562	blood:
3	chr5:145458057..145460879-chr5:145476670..145479108,2	K562	blood:
4	chr5:145454784..145457584-chr5:145457829..145461118,4	K562	blood:

Variant related genes	Relation type
ENSG00000251556	Chromatin interaction

Extended variants
information (count: 286 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:285)

rs_ID	r²[population]
rs1006204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10491259	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491260	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491261	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10515566	0.82[CEU][hapmap]
rs1054020	1.00[JPT][hapmap]
rs10988	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167931	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167933	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11167934	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540214	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540215	0.88[EUR][1000 genomes]
rs11540217	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948016	0.81[EUR][1000 genomes]
rs11948180	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948314	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11949351	0.89[EUR][1000 genomes]
rs11949352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11949703	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11951553	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11952228	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11952281	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11952697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953090	1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs11953506	0.82[CEU][hapmap]
rs11953517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11953586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954083	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954750	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954870	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954923	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954977	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11955557	0.86[EUR][1000 genomes]
rs11955635	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11955695	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11956508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11957830	0.88[EUR][1000 genomes]
rs11957888	0.89[EUR][1000 genomes]
rs11957998	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs11958136	0.80[JPT][hapmap]
rs11958216	0.84[EUR][1000 genomes]
rs11958630	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11959805	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11960510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153109	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12153238	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186358	1.00[JPT][hapmap]
rs12186642	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12187128	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187277	0.80[JPT][hapmap]
rs12187649	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12187913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188581	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188772	0.81[EUR][1000 genomes]
rs12188941	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12189385	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12374457	0.93[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12374516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12374538	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12374539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13153675	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13154547	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13154735	0.86[EUR][1000 genomes]
rs13155119	0.82[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs13157279	0.89[EUR][1000 genomes]
rs13159380	0.89[EUR][1000 genomes]
rs13161036	0.87[EUR][1000 genomes]
rs13161075	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13161659	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162233	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162640	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13164882	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171596	0.88[EUR][1000 genomes]
rs13171828	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171939	0.80[JPT][hapmap]
rs13172010	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173462	0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap]
rs13174055	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13175806	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13176784	0.89[EUR][1000 genomes]
rs13176915	0.89[EUR][1000 genomes]
rs13178370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178516	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178755	0.88[EUR][1000 genomes]
rs13178840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13179517	0.88[EUR][1000 genomes]
rs13180113	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13180255	0.80[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs13181074	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13182302	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13182567	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13182838	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13183976	0.80[JPT][hapmap]
rs13184702	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13185805	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186694	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186701	0.88[EUR][1000 genomes]
rs1395276	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1395277	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1567057	0.80[JPT][hapmap]
rs17212373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17212380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426845	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427286	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427691	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428100	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428570	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428647	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17428724	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17429180	0.82[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs17492851	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17492893	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17492950	1.00[JPT][hapmap]
rs17493090	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17493851	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500456	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500483	1.00[JPT][hapmap]
rs17500504	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500927	0.81[EUR][1000 genomes]
rs17501177	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs17796852	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17796858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17796876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1911112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1911113	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1985600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2015248	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2024055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2024057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2063005	0.94[JPT][hapmap]
rs2116749	0.80[JPT][hapmap]
rs2240524	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279895	0.91[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2292172	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2292173	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2302036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2304032	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs2304033	0.81[CEU][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2400209	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2400211	0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895647	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895648	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895649	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895650	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2939527	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2939536	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2962502	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2962511	1.00[JPT][hapmap]
rs2962515	0.89[EUR][1000 genomes]
rs2963914	1.00[JPT][hapmap]
rs2963915	1.00[JPT][hapmap]
rs2963919	1.00[JPT][hapmap]
rs2963921	1.00[JPT][hapmap]
rs2963924	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs33914983	0.89[EUR][1000 genomes]
rs34014355	0.89[EUR][1000 genomes]
rs34049009	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34071526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34078408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34160255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34170515	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34272709	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342344	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34345997	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34404385	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34405762	0.84[EUR][1000 genomes]
rs34461274	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34482773	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34516108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34529192	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34530601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34581962	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34601905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34672485	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34683303	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34774165	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34794113	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34794547	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34818573	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34818690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34848484	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35048686	0.90[EUR][1000 genomes]
rs35150639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35185759	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35228139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35238125	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35262581	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35283996	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35291206	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35421100	0.89[EUR][1000 genomes]
rs35421875	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35424128	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35436549	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35581472	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35652702	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35658996	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35676277	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35749752	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35801832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35821418	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35825928	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35868039	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35869904	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35917756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059140	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36095232	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36098188	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36102990	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36122632	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3749994	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3763373	0.95[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3797626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797627	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797628	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3822623	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3828935	0.95[CEU][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41338847	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4413574	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4443471	0.89[EUR][1000 genomes]
rs4705119	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705156	0.80[JPT][hapmap]
rs4705179	0.82[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs4705398	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705438	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4913061	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4913062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4913063	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913067	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55665974	0.83[EUR][1000 genomes]
rs55681213	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55681251	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55782203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55799797	0.86[EUR][1000 genomes]
rs55812375	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55826688	0.83[AMR][1000 genomes]
rs55874924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909935	0.83[EUR][1000 genomes]
rs56278005	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56338521	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56338615	0.89[EUR][1000 genomes]
rs56393319	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56410805	0.83[EUR][1000 genomes]
rs62373771	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373773	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373774	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373785	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373786	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373789	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373795	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62373798	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373799	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373801	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373809	0.88[EUR][1000 genomes]
rs62373810	0.88[EUR][1000 genomes]
rs62373811	0.87[EUR][1000 genomes]
rs62373812	0.88[EUR][1000 genomes]
rs62373813	0.88[EUR][1000 genomes]
rs62373819	0.83[EUR][1000 genomes]
rs6580408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs66538287	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67051761	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67598659	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67829086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67986716	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68022863	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6877277	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881180	0.80[JPT][hapmap]
rs71594528	0.89[EUR][1000 genomes]
rs72820460	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72822286	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7443214	0.91[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes]
rs7722258	0.80[JPT][hapmap]
rs7725078	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7728381	1.00[JPT][hapmap]
rs7729098	0.80[JPT][hapmap]
rs9918101	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs17796864	PLAC8L1	cis	parietal	SCAN
rs17796864	LARS	cis	Artery Tibial	GTEx
rs17796864	PPP2R2B	cis	parietal	SCAN
rs17796864	LARS	cis	parietal	SCAN
rs17796864	LARS	cis	Nerve Tibial	GTEx
rs17796864	PPP2R2B	cis	cerebellum	SCAN
rs17796864	LARS	cis	cerebellum	SCAN
rs17796864	LARS	cis	Thyroid	GTEx

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145429600-145459600	Weak transcription	Stomach Mucosa	stomach
2	chr5:145442400-145461200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145443600-145461000	Weak transcription	Colonic Mucosa	Colon
4	chr5:145448000-145460000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:145450600-145461000	Weak transcription	Right Atrium	heart
6	chr5:145451000-145459800	Weak transcription	Esophagus	oesophagus
7	chr5:145451800-145460000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:145451800-145460600	Weak transcription	Aorta	Aorta
9	chr5:145452200-145459400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:145453600-145461400	Weak transcription	Right Ventricle	heart
11	chr5:145454200-145461000	Weak transcription	Left Ventricle	heart
12	chr5:145454600-145461000	Weak transcription	Fetal Brain Male	brain
13	chr5:145456200-145459800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:145456400-145461400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:145456800-145461000	Weak transcription	Fetal Heart	heart
17	chr5:145456800-145461200	Weak transcription	Fetal Brain Female	brain
18	chr5:145457400-145459600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:145457600-145459600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:145457600-145459800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:145457600-145459800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:145457800-145459600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:145457800-145459800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:145458000-145459400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:145458000-145459600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:145458000-145459800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr5:145458200-145459800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:145458600-145459600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:145458600-145459600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:145458600-145460400	Weak transcription	Liver	Liver
31	chr5:145458600-145461600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:145458800-145461400	Weak transcription	Fetal Intestine Large	intestine
33	chr5:145459000-145459400	Enhancers	GM12878-XiMat	blood
34	chr5:145459000-145459600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr5:145459000-145459600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr5:145459000-145459600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:145459000-145459800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:145459000-145459800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr5:145459000-145459800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr5:145459000-145459800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr5:145459000-145459800	Enhancers	HMEC	breast
42	chr5:145459000-145459800	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr5:145459000-145460200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr5:145459000-145460400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:145459000-145460400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:145459200-145459400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr5:145459200-145459400	Genic enhancers	Rectal Mucosa Donor 29	rectum
48	chr5:145459200-145459400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr5:145459200-145459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:145459200-145459600	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

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