Variant report

Variant	rs11956508
Chromosome Location	chr5:145460464-145460465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145456217..145460713-chr5:145463398..145466718,4	K562	blood:
2	chr5:145455824..145457469-chr5:145458591..145461118,2	K562	blood:
3	chr5:145442111..145444573-chr5:145459744..145461305,2	K562	blood:
4	chr5:145458057..145460879-chr5:145476670..145479108,2	K562	blood:
5	chr5:145454784..145457584-chr5:145457829..145461118,4	K562	blood:

Variant related genes	Relation type
ENSG00000251556	Chromatin interaction

Extended variants
information (count: 258 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:257)

rs_ID	r²[population]
rs1006204	1.00[ASN][1000 genomes]
rs10491259	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10491260	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10491261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10515564	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10988	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167931	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167932	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167933	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11167934	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540214	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540215	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11540217	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948016	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11948180	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948314	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11949351	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11949352	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11949703	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11951553	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11952228	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11952281	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11952697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11953517	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11953586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11954083	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954750	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954870	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954923	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954977	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11955557	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11955635	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11955695	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11957830	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11957888	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11957998	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11958216	0.84[EUR][1000 genomes]
rs11958630	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11959805	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11960510	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153109	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12153238	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186642	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12187128	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12187649	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12187913	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12188066	0.81[ASN][1000 genomes]
rs12188581	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12188772	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12188941	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12189385	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12374457	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12374516	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12374538	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12374539	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13153675	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13154547	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13154735	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13157279	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13159380	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13161036	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13161075	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13161659	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162233	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162640	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13164882	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171596	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13171828	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13172010	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174055	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13175806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13176784	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13176915	0.89[EUR][1000 genomes]
rs13178370	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178516	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178755	0.88[EUR][1000 genomes]
rs13178840	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13179517	0.88[EUR][1000 genomes]
rs13180113	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13181074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13182302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13182567	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13182838	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13184702	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13185586	0.91[AFR][1000 genomes]
rs13185805	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186694	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186701	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1395276	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1395277	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1506431	0.91[AFR][1000 genomes]
rs17212373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17212380	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17426845	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427286	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427691	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428100	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428465	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428570	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428647	0.88[EUR][1000 genomes]
rs17428724	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17492851	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17492893	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17493090	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17493851	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500456	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500504	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500927	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17796852	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17796858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17796864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17796870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911112	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1911113	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1985600	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015248	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2024055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024056	1.00[ASN][1000 genomes]
rs2024057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063002	0.81[EUR][1000 genomes]
rs2240524	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292172	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2292173	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2302036	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400209	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2400211	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2895647	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895648	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895649	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895650	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2939527	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2939536	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2962515	0.89[EUR][1000 genomes]
rs2963924	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs33914983	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34014355	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34049009	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34071526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34078408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34160255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34170515	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34272709	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342344	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34345997	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34404385	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34405762	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34461274	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34482773	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34516108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34529192	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34530601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34533649	0.91[AFR][1000 genomes]
rs34581962	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34601905	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34672485	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34683303	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34774165	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34794113	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34794547	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34818573	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34818690	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34848484	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35048686	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35150639	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35185759	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35228139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35238125	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35262581	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35283996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35291206	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35421100	0.89[EUR][1000 genomes]
rs35421875	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35424128	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35436549	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35581472	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35652702	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35658996	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35676277	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35749752	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35801832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35821418	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35825928	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35868039	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35869904	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35917756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36059140	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36095232	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36098188	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36102990	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36122632	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3749994	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3763373	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3797626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3797627	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3797628	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3822623	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3828935	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41338847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4413574	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4443471	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4705119	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705398	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705438	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4913061	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4913062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4913063	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913064	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913067	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55665974	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55681213	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55681251	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55782203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55799797	0.86[EUR][1000 genomes]
rs55812375	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55826688	0.83[AMR][1000 genomes]
rs55874924	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55909935	0.83[EUR][1000 genomes]
rs56278005	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56338521	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56338615	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56393319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56410805	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62373771	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373773	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373774	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62373785	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373786	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373789	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373795	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62373798	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373799	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373801	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373809	0.88[EUR][1000 genomes]
rs62373810	0.88[EUR][1000 genomes]
rs62373811	0.87[EUR][1000 genomes]
rs62373812	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62373813	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62373819	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62373824	0.91[AFR][1000 genomes]
rs6580408	1.00[ASN][1000 genomes]
rs66538287	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67051761	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67598659	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67829086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67986716	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68022863	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6862371	0.81[ASN][1000 genomes]
rs6877277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6892928	0.81[ASN][1000 genomes]
rs71594528	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72820460	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72822286	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7443214	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7725078	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11956508	LARS	cis	Nerve Tibial	GTEx
rs11956508	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs11956508	LARS	cis	Artery Tibial	GTEx
rs11956508	LARS	cis	Thyroid	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145442400-145461200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:145443600-145461000	Weak transcription	Colonic Mucosa	Colon
3	chr5:145450600-145461000	Weak transcription	Right Atrium	heart
4	chr5:145451800-145460600	Weak transcription	Aorta	Aorta
5	chr5:145453600-145461400	Weak transcription	Right Ventricle	heart
6	chr5:145454200-145461000	Weak transcription	Left Ventricle	heart
7	chr5:145454600-145461000	Weak transcription	Fetal Brain Male	brain
8	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:145456400-145461400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:145456800-145461000	Weak transcription	Fetal Heart	heart
11	chr5:145456800-145461200	Weak transcription	Fetal Brain Female	brain
12	chr5:145458600-145461600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:145458800-145461400	Weak transcription	Fetal Intestine Large	intestine
14	chr5:145459400-145461200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:145459400-145461400	Weak transcription	HSMM	muscle
16	chr5:145459400-145461600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr5:145459600-145461000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:145459600-145461000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:145459600-145463400	Weak transcription	NHEK	skin
20	chr5:145459800-145460800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:145459800-145460800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr5:145459800-145460800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:145459800-145471200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:145459800-145492000	Weak transcription	HSMMtube	muscle
25	chr5:145460400-145461000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links