Variant report

Variant	rs3797627
Chromosome Location	chr5:145456724-145456725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145455712..145457745-chr5:145463209..145465504,2	MCF-7	breast:
2	chr11:10952312..10953274-chr5:145456276..145456939,2	MCF-7	breast:
3	chr5:145456217..145460713-chr5:145463398..145466718,4	K562	blood:
4	chr5:145455824..145457469-chr5:145458591..145461118,2	K562	blood:
5	chr5:145454784..145457584-chr5:145457829..145461118,4	K562	blood:

Extended variants
information (count: 295 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:294)

rs_ID	r²[population]
rs1006204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10491259	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491260	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10491261	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10515566	0.83[CEU][hapmap]
rs1054020	1.00[JPT][hapmap]
rs10988	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167931	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11167933	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11167934	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540214	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11540215	0.88[EUR][1000 genomes]
rs11540217	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948016	0.81[EUR][1000 genomes]
rs11948180	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11948314	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11949351	0.89[EUR][1000 genomes]
rs11949352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11949703	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11951553	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11952228	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11952281	0.88[EUR][1000 genomes]
rs11952697	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953506	0.83[CEU][hapmap]
rs11953517	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11953586	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954083	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954750	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954870	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954923	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11954977	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11955557	0.86[EUR][1000 genomes]
rs11955635	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11955695	0.91[EUR][1000 genomes]
rs11956508	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11957830	0.88[EUR][1000 genomes]
rs11957888	0.89[EUR][1000 genomes]
rs11957998	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs11958136	0.81[JPT][hapmap]
rs11958216	0.84[EUR][1000 genomes]
rs11958630	0.91[EUR][1000 genomes]
rs11959805	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11960510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153109	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12153238	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12186358	1.00[JPT][hapmap]
rs12186642	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12187128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187277	0.80[JPT][hapmap]
rs12187649	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12187913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188581	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188772	0.81[EUR][1000 genomes]
rs12188941	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12189385	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12374457	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12374516	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12374538	0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12374539	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13153675	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13154547	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13154735	0.86[EUR][1000 genomes]
rs13155119	0.82[CEU][hapmap]
rs13157279	0.89[EUR][1000 genomes]
rs13159380	0.89[EUR][1000 genomes]
rs13161036	0.87[EUR][1000 genomes]
rs13161075	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13161659	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162233	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162640	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13164882	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171596	0.88[EUR][1000 genomes]
rs13171828	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13171939	0.80[JPT][hapmap]
rs13172010	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13173462	0.84[JPT][hapmap]
rs13174055	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13175806	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13176784	0.89[EUR][1000 genomes]
rs13176915	0.89[EUR][1000 genomes]
rs13178370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178516	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13178755	0.88[EUR][1000 genomes]
rs13178840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13179517	0.88[EUR][1000 genomes]
rs13180113	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13180255	0.80[JPT][hapmap]
rs13181074	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181077	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13182302	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13182567	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13182838	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13183976	0.80[JPT][hapmap]
rs13184702	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13185805	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186694	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186701	0.88[EUR][1000 genomes]
rs1395276	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1395277	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1567057	0.80[JPT][hapmap]
rs17212373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17212380	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426845	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427286	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427691	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428100	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428465	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428570	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428647	0.88[EUR][1000 genomes]
rs17428724	0.95[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17429180	0.82[CEU][hapmap]
rs17492851	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17492893	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17492950	1.00[JPT][hapmap]
rs17493090	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17493851	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500456	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500483	1.00[JPT][hapmap]
rs17500504	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17500927	0.81[EUR][1000 genomes]
rs17501177	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs17796852	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17796858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17796876	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859897	0.82[YRI][hapmap]
rs1911112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1911113	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1985600	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2015248	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2024055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2024057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2063005	0.94[JPT][hapmap]
rs2116749	0.80[JPT][hapmap]
rs2240524	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279895	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2292172	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2292173	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2302036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2304032	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs2304033	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs2400209	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2400211	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2895647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895648	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895649	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2895650	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2939522	0.91[YRI][hapmap]
rs2939527	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2939534	0.91[YRI][hapmap]
rs2939536	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2939538	0.90[YRI][hapmap]
rs2962500	0.91[YRI][hapmap]
rs2962502	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2962505	0.91[YRI][hapmap]
rs2962507	0.91[YRI][hapmap]
rs2962511	1.00[JPT][hapmap]
rs2962514	0.91[YRI][hapmap]
rs2962515	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2962516	0.91[YRI][hapmap]
rs2963914	1.00[JPT][hapmap]
rs2963915	1.00[JPT][hapmap]
rs2963919	1.00[JPT][hapmap]
rs2963921	1.00[JPT][hapmap]
rs2963924	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2963937	0.91[YRI][hapmap]
rs33914983	0.89[EUR][1000 genomes]
rs34014355	0.89[EUR][1000 genomes]
rs34049009	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34071526	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34078408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34160255	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34170515	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34272709	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342344	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34345997	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34404385	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34405762	0.84[EUR][1000 genomes]
rs34461274	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34482773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34516108	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34529192	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34530601	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34581962	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34601905	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34672485	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34683303	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34774165	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34794113	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34794547	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34818573	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34818690	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34848484	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35048686	0.90[EUR][1000 genomes]
rs35150639	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35185759	0.91[EUR][1000 genomes]
rs35228139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35238125	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35262581	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35283996	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35291206	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35421100	0.89[EUR][1000 genomes]
rs35421875	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35424128	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35436549	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35581472	0.86[EUR][1000 genomes]
rs35652702	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35658996	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35676277	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35749752	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35801832	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35821418	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35825928	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35868039	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35869904	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35917756	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059140	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36095232	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36098188	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36102990	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36122632	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3749994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3763373	0.95[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3797626	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797628	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3822623	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3828935	0.95[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41338847	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4413574	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4443471	0.89[EUR][1000 genomes]
rs4705119	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705156	0.80[JPT][hapmap]
rs4705179	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs4705398	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705438	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4913061	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4913062	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4913063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4913067	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55665974	0.83[EUR][1000 genomes]
rs55681213	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55681251	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55782203	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55799797	0.86[EUR][1000 genomes]
rs55812375	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55874924	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909935	0.83[EUR][1000 genomes]
rs56278005	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56338521	0.91[ASN][1000 genomes]
rs56338615	0.89[EUR][1000 genomes]
rs56393319	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56410805	0.83[EUR][1000 genomes]
rs62373771	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373773	0.96[EUR][1000 genomes]
rs62373774	0.96[EUR][1000 genomes]
rs62373785	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373786	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373789	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62373795	0.84[EUR][1000 genomes]
rs62373798	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373799	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373801	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373802	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373809	0.88[EUR][1000 genomes]
rs62373810	0.88[EUR][1000 genomes]
rs62373811	0.87[EUR][1000 genomes]
rs62373812	0.88[EUR][1000 genomes]
rs62373813	0.88[EUR][1000 genomes]
rs62373819	0.83[EUR][1000 genomes]
rs6580408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs66538287	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67051761	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67598659	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67829086	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67986716	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68022863	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6877277	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881180	0.80[JPT][hapmap]
rs71594528	0.89[EUR][1000 genomes]
rs72820460	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72822286	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7443214	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7707229	0.82[YRI][hapmap]
rs7722258	0.80[JPT][hapmap]
rs7725078	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7728381	1.00[JPT][hapmap]
rs7729098	0.80[JPT][hapmap]
rs9918101	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3797627	LARS	Cis_1M	lymphoblastoid	RTeQTL
rs3797627	LARS	cis	Nerve Tibial	GTEx
rs3797627	LARS	cis	Artery Tibial	GTEx
rs3797627	LARS	cis	Thyroid	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145429600-145459600	Weak transcription	Stomach Mucosa	stomach
2	chr5:145442400-145461200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145443200-145458000	Weak transcription	Liver	Liver
4	chr5:145443600-145461000	Weak transcription	Colonic Mucosa	Colon
5	chr5:145448000-145460000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:145448400-145458000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:145450000-145458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:145450600-145461000	Weak transcription	Right Atrium	heart
9	chr5:145451000-145459800	Weak transcription	Esophagus	oesophagus
10	chr5:145451600-145458200	Weak transcription	NHEK	skin
11	chr5:145451800-145456800	Enhancers	Fetal Heart	heart
12	chr5:145451800-145459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:145451800-145459000	Weak transcription	HMEC	breast
14	chr5:145451800-145460000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:145451800-145460600	Weak transcription	Aorta	Aorta
16	chr5:145452200-145459400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:145453600-145459200	Weak transcription	Pancreas	Pancrea
18	chr5:145453600-145461400	Weak transcription	Right Ventricle	heart
19	chr5:145454200-145461000	Weak transcription	Left Ventricle	heart
20	chr5:145454600-145461000	Weak transcription	Fetal Brain Male	brain
21	chr5:145455200-145457000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr5:145455400-145456800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:145455400-145456800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr5:145455400-145456800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:145455400-145457000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:145455600-145456800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:145455800-145456800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:145455800-145456800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:145455800-145456800	Enhancers	Fetal Brain Female	brain
30	chr5:145456000-145456800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:145456200-145456800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:145456200-145457200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:145456200-145457200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr5:145456200-145458000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr5:145456200-145458000	Weak transcription	Fetal Intestine Large	intestine
36	chr5:145456200-145459000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:145456200-145459200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:145456200-145459800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:145456400-145458000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:145456400-145461400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr5:145456600-145457600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:145456600-145457800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr5:145456600-145459000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

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