Variant report

Variant	rs1859897
Chromosome Location	chr5:145464130-145464131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10477298	1.00[AMR][1000 genomes]
rs10491259	0.82[YRI][hapmap]
rs2063002	0.82[YRI][hapmap]
rs2939524	1.00[AMR][1000 genomes]
rs2939525	1.00[AMR][1000 genomes]
rs2939536	0.82[YRI][hapmap]
rs2939537	0.89[YRI][hapmap]
rs2962504	1.00[AMR][1000 genomes]
rs2962506	0.89[YRI][hapmap]
rs2962512	0.89[YRI][hapmap]
rs2963932	1.00[AMR][1000 genomes]
rs34585648	1.00[AMR][1000 genomes]
rs6877277	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:145459800-145471200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:145459800-145492000	Weak transcription	HSMMtube	muscle
4	chr5:145464000-145464200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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