Variant report
| Variant | rs2939539 |
|---|---|
| Chromosome Location | chr5:145541857-145541858 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:145481200-145560200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:145491000-145542200 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr5:145491000-145551600 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 4 | chr5:145491000-145553800 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 5 | chr5:145491000-145560200 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 6 | chr5:145491200-145552600 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 7 | chr5:145491200-145560200 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 8 | chr5:145491200-145560200 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 9 | chr5:145491200-145560800 | Weak transcription | Stomach Mucosa | stomach |
| 10 | chr5:145491400-145560000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 11 | chr5:145491400-145560400 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 12 | chr5:145491600-145557000 | Strong transcription | Primary T helper cells fromperipheralblood | blood |
| 13 | chr5:145491600-145559800 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 14 | chr5:145491800-145546400 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 15 | chr5:145492000-145552200 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 16 | chr5:145492200-145560200 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 17 | chr5:145495800-145559200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 18 | chr5:145496200-145552200 | Strong transcription | Primary B cells from peripheral blood | blood |
| 19 | chr5:145499000-145557400 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 20 | chr5:145506200-145542000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 21 | chr5:145510800-145546800 | Strong transcription | Primary T cells from cord blood | blood |
| 22 | chr5:145511200-145542000 | Strong transcription | Fetal Muscle Trunk | muscle |
| 23 | chr5:145511200-145542200 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 24 | chr5:145511200-145548000 | Strong transcription | Fetal Adrenal Gland | Adrenal Gland |
| 25 | chr5:145511600-145552800 | Strong transcription | Fetal Thymus | thymus |
| 26 | chr5:145511600-145556800 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 27 | chr5:145515800-145546800 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 28 | chr5:145515800-145557400 | Strong transcription | Liver | Liver |
| 29 | chr5:145516800-145545600 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 30 | chr5:145517000-145553000 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 31 | chr5:145518600-145545200 | Strong transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 32 | chr5:145518800-145552800 | Strong transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 33 | chr5:145519000-145551600 | Strong transcription | Primary T regulatory cells fromperipheralblood | blood |
| 34 | chr5:145519200-145558200 | Strong transcription | Dnd41 | blood |
| 35 | chr5:145519400-145545200 | Strong transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 36 | chr5:145519400-145551800 | Strong transcription | Skeletal Muscle Female | skeletal muscle |
| 37 | chr5:145519600-145546800 | Strong transcription | HSMM | muscle |
| 38 | chr5:145520000-145551800 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 39 | chr5:145520200-145551800 | Strong transcription | Muscle Satellite Cultured Cells | -- |
| 40 | chr5:145520600-145548400 | Strong transcription | Primary T helper cells PMA-I stimulated | -- |
| 41 | chr5:145521600-145542000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 42 | chr5:145521600-145548000 | Strong transcription | A549 | lung |
| 43 | chr5:145526000-145546200 | Strong transcription | H9 Cell Line | embryonic stem cell |
| 44 | chr5:145526000-145550800 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 45 | chr5:145526200-145551600 | Strong transcription | Rectal Mucosa Donor 31 | rectum |
| 46 | chr5:145526200-145553000 | Strong transcription | Primary T cells fromperipheralblood | blood |
| 47 | chr5:145526400-145551800 | Strong transcription | Duodenum Mucosa | Duodenum |
| 48 | chr5:145526400-145551800 | Strong transcription | Placenta | Placenta |
| 49 | chr5:145526400-145551800 | Strong transcription | Stomach Smooth Muscle | stomach |
| 50 | chr5:145526600-145546200 | Strong transcription | HUVEC | blood vessel |
