Variant report

Variant	rs17502345
Chromosome Location	chr5:145672255-145672256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145670280..145672735-chr5:145688584..145691508,2	K562	blood:
2	chr5:145669514..145673620-chr5:145676899..145679881,3	K562	blood:

Extended variants
information (count: 233 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10491259	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs10491260	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10491261	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10515564	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs10515565	0.85[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs10515566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10515567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1054020	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1115080	0.90[ASN][1000 genomes]
rs11167932	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11167937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11540215	0.87[AMR][1000 genomes]
rs11948016	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11948314	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11949351	0.87[AMR][1000 genomes]
rs11950903	0.80[ASN][1000 genomes]
rs11952445	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11953090	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11953506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953517	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs11954083	0.82[CEU][hapmap]
rs11954297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11954750	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11954977	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11955206	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11955557	0.82[AMR][1000 genomes]
rs11957830	0.86[AMR][1000 genomes]
rs11957888	0.87[AMR][1000 genomes]
rs11957907	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11957998	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11958136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11958216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11958633	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12152830	0.91[ASN][1000 genomes]
rs12153109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12153364	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12186358	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs12187277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12187913	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.92[TSI][hapmap]
rs12188581	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs12188772	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12189077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12189385	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13153675	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs13153891	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13154219	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13154735	0.87[AMR][1000 genomes]
rs13155119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13157279	0.87[AMR][1000 genomes]
rs13157784	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13159380	0.87[AMR][1000 genomes]
rs13160605	0.90[ASN][1000 genomes]
rs13160905	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13161036	0.87[AMR][1000 genomes]
rs13161075	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs13161659	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13162175	0.80[ASN][1000 genomes]
rs13164872	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13168967	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13169370	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13169390	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13171596	0.87[AMR][1000 genomes]
rs13171939	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13173347	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13173462	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13176784	0.85[AMR][1000 genomes]
rs13176915	0.87[AMR][1000 genomes]
rs13177015	0.96[ASN][1000 genomes]
rs13178370	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13178443	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13178516	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13178755	0.87[AMR][1000 genomes]
rs13178840	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13179296	0.80[ASN][1000 genomes]
rs13179517	0.87[AMR][1000 genomes]
rs13180255	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13181074	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13182302	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13182567	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13182948	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13183541	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13183976	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13185518	0.88[ASN][1000 genomes]
rs13185586	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13186694	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13186701	0.87[AMR][1000 genomes]
rs1368345	0.91[ASN][1000 genomes]
rs1395277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1506431	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1567057	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17096590	0.88[ASN][1000 genomes]
rs17426775	1.00[ASW][hapmap]
rs17427286	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17427691	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428100	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428465	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17428570	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17428647	0.87[AMR][1000 genomes]
rs17428724	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes]
rs17429180	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17443315	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17492851	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17492950	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17493090	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs17500483	1.00[CHB][hapmap];0.97[CHD][hapmap]
rs17500504	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs17500927	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17501177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17501601	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17502157	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17502233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17687490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864948	0.91[ASN][1000 genomes]
rs1876189	0.80[ASN][1000 genomes]
rs1911112	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs1911113	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2014462	0.91[ASN][1000 genomes]
rs2014469	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2014473	0.91[ASN][1000 genomes]
rs2053045	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2063002	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2063005	0.92[CHB][hapmap];0.87[CHD][hapmap]
rs2116749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2279895	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2304032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2304033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2400209	0.92[CHB][hapmap]
rs2400211	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895647	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2895648	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2895649	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs2939523	0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2939536	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2962502	1.00[CHB][hapmap]
rs2962511	1.00[CHB][hapmap];0.97[CHD][hapmap]
rs2962515	0.82[AMR][1000 genomes]
rs2963914	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2963915	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs2963919	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs2963921	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs2963926	0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs33914983	0.87[AMR][1000 genomes]
rs34014355	0.87[AMR][1000 genomes]
rs34082425	0.94[ASN][1000 genomes]
rs34141601	0.93[ASN][1000 genomes]
rs34170515	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs34405762	0.85[AMR][1000 genomes]
rs34444119	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34533649	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34775587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34812645	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34819107	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34993855	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35048686	0.87[AMR][1000 genomes]
rs35142541	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35170264	0.88[ASN][1000 genomes]
rs35369194	0.86[ASN][1000 genomes]
rs35421100	0.87[AMR][1000 genomes]
rs35575652	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35728795	0.83[ASN][1000 genomes]
rs35870798	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35935643	0.93[ASN][1000 genomes]
rs35947468	0.99[ASN][1000 genomes]
rs36019024	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3749994	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs3763373	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs3797628	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap]
rs3822623	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3828935	0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap]
rs3937558	0.91[ASN][1000 genomes]
rs41338847	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs4413574	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes]
rs4443471	0.87[AMR][1000 genomes]
rs4705156	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4705157	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705445	0.80[ASN][1000 genomes]
rs4913064	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs55665974	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55726586	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55799797	0.87[AMR][1000 genomes]
rs55909935	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55937908	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56240028	0.80[ASN][1000 genomes]
rs56338615	0.87[AMR][1000 genomes]
rs56410805	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56413906	0.88[ASN][1000 genomes]
rs58848845	0.96[ASN][1000 genomes]
rs62372766	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62372767	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62372768	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62372769	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62372772	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62372773	0.99[ASN][1000 genomes]
rs62373809	0.81[AMR][1000 genomes]
rs62373810	0.81[AMR][1000 genomes]
rs62373811	0.84[AMR][1000 genomes]
rs62373812	0.87[AMR][1000 genomes]
rs62373813	0.87[AMR][1000 genomes]
rs62373819	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62373824	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62373831	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6580413	0.91[ASN][1000 genomes]
rs6867146	0.99[ASN][1000 genomes]
rs6868728	0.91[ASN][1000 genomes]
rs6870878	0.88[ASN][1000 genomes]
rs6877277	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6878005	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6881180	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6882517	0.91[ASN][1000 genomes]
rs6884493	0.99[ASN][1000 genomes]
rs6893994	0.88[ASN][1000 genomes]
rs71594528	0.87[AMR][1000 genomes]
rs7443214	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7702123	0.97[ASN][1000 genomes]
rs7703269	0.97[ASN][1000 genomes]
rs7711896	0.80[ASN][1000 genomes]
rs7722258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7724811	0.99[ASN][1000 genomes]
rs7727353	0.88[ASN][1000 genomes]
rs7728381	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs7729098	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9918101	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs9918130	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv883007	chr5:145506100-145672431	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv883009	chr5:145567877-145672431	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv883011	chr5:145583623-145672431	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv883012	chr5:145589542-145672431	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs17502345	LARS	cis	cerebellum	SCAN
rs17502345	LARS	cis	Thyroid	GTEx
rs17502345	LARS	cis	parietal	SCAN
rs17502345	LARS	cis	Esophagus Muscularis	GTEx
rs17502345	LARS	cis	Artery Tibial	GTEx
rs17502345	LARS	cis	Nerve Tibial	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145649200-145676200	Weak transcription	Fetal Brain Male	brain
2	chr5:145652800-145672400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:145657800-145676000	Weak transcription	Brain Substantia Nigra	brain
4	chr5:145663200-145674400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:145663200-145674600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:145665800-145672600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:145666600-145677000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:145667000-145677400	Weak transcription	HUVEC	blood vessel
9	chr5:145667200-145675400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:145667400-145675400	Weak transcription	A549	lung
11	chr5:145668400-145672600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:145669000-145672400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:145669000-145681000	Weak transcription	HSMM	muscle
14	chr5:145669200-145672400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:145669400-145673600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:145671400-145673200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:145671600-145673200	Enhancers	HMEC	breast
18	chr5:145672000-145672600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:145672000-145672800	Enhancers	NHEK	skin

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