The 2.0 version of rSNPBase

Variant report

Variant rs58848845
Chromosome Location chr5:145658432-145658433
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145597000-145668400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr5:145611200-145670600 Weak transcription Small Intestine intestine
3 chr5:145613400-145658800 Weak transcription Pancreas Pancrea
4 chr5:145621000-145664600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr5:145623000-145667800 Strong transcription Dnd41 blood
6 chr5:145624800-145665200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr5:145628200-145669000 Strong transcription Primary T helper cells fromperipheralblood blood
8 chr5:145630600-145667000 Strong transcription Fetal Thymus thymus
9 chr5:145630600-145667400 Strong transcription Primary T cells fromperipheralblood blood
10 chr5:145630800-145658800 Strong transcription HUES64 Cell Line embryonic stem cell
11 chr5:145630800-145667200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr5:145630800-145668400 Strong transcription Primary monocytes fromperipheralblood blood
13 chr5:145630800-145669600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr5:145631000-145668400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr5:145631200-145662600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr5:145631200-145669000 Strong transcription Liver Liver
17 chr5:145633000-145669400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr5:145633800-145667200 Strong transcription Primary hematopoietic stem cells short term culture blood
19 chr5:145639400-145662400 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr5:145640000-145662000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr5:145641400-145663000 Weak transcription Right Ventricle heart
22 chr5:145641400-145668000 Weak transcription Gastric stomach
23 chr5:145641600-145658800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:145641600-145670600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr5:145642400-145659800 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr5:145642400-145667400 Weak transcription Brain Angular Gyrus brain
27 chr5:145642800-145662800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr5:145642800-145662800 Weak transcription Aorta Aorta
29 chr5:145643600-145664400 Weak transcription Lung lung
30 chr5:145644000-145662800 Weak transcription HSMMtube muscle
31 chr5:145644400-145658800 Strong transcription K562 blood
32 chr5:145645200-145663200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
33 chr5:145645200-145664800 Strong transcription Fetal Intestine Large intestine
34 chr5:145645600-145662400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr5:145645600-145667200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr5:145647200-145666600 Strong transcription Primary neutrophils fromperipheralblood blood
37 chr5:145649200-145676200 Weak transcription Fetal Brain Male brain
38 chr5:145649600-145661200 Weak transcription Ovary ovary
39 chr5:145649600-145663200 Weak transcription Placenta Amnion Placenta Amnion
40 chr5:145651200-145659000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr5:145651200-145665800 Weak transcription Fetal Kidney kidney
42 chr5:145651400-145660000 Weak transcription NH-A brain
43 chr5:145651400-145662000 Weak transcription GM12878-XiMat blood
44 chr5:145651400-145662800 Weak transcription NHLF lung
45 chr5:145651400-145663600 Weak transcription Stomach Mucosa stomach
46 chr5:145651600-145662800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr5:145652000-145659600 Weak transcription Hela-S3 cervix
48 chr5:145652000-145660000 Weak transcription Primary T killer naive cells fromperipheralblood blood
49 chr5:145652000-145661800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr5:145652000-145662800 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015