Variant report

Variant	nsv883479
Chromosome Location	chr6:23804221-24090497
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:943)
CpG islands
(count:245)
Chromatin interactive
region (count:40)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:943 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:24064387-24064651	HepG2	liver:	n/a	n/a
2	ATF1	chr6:23872111-23872462	K562	blood:	n/a	n/a
3	ATF2	chr6:24061068-24061690	GM12878	blood:	n/a	n/a
4	ATF2	chr6:24061072-24061663	GM12878	blood:	n/a	n/a
5	BACH1	chr6:24033542-24033853	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr6:24061187-24061605	GM12878	blood:	n/a	chr6:24061394-24061405
7	BATF	chr6:24072578-24072992	GM12878	blood:	n/a	n/a
8	BATF	chr6:23826865-23827117	GM12878	blood:	n/a	chr6:23827021-23827032
9	BATF	chr6:23826897-23827147	GM12878	blood:	n/a	chr6:23827021-23827032
10	BATF	chr6:24061171-24061628	GM12878	blood:	n/a	chr6:24061394-24061405
11	BCL11A	chr6:24061192-24061589	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:24061164-24061659	GM12878	blood:	n/a	n/a
13	BCL11A	chr6:24072627-24072870	GM12878	blood:	n/a	n/a
14	BCL3	chr6:24061236-24061609	GM12878	blood:	n/a	n/a
15	BCLAF1	chr6:24061165-24061598	GM12878	blood:	n/a	n/a
16	BHLHE40	chr6:24072676-24072944	GM12878	blood:	n/a	n/a
17	CCNT2	chr6:23873770-23873922	K562	blood:	n/a	n/a
18	CCNT2	chr6:23956182-23956382	K562	blood:	n/a	n/a
19	CEBPB	chr6:23889264-23889546	IMR90	lung:	n/a	chr6:23889417-23889428
20	CEBPB	chr6:23965102-23965476	A549	lung:	n/a	chr6:23965289-23965300
21	CEBPB	chr6:23965094-23965449	MCF-7	breast:	n/a	chr6:23965289-23965300
22	CEBPB	chr6:24061061-24061745	GM12878	blood:	n/a	n/a
23	CEBPB	chr6:23890803-23891143	HepG2	liver:	n/a	chr6:23890971-23890982 chr6:23890956-23890967 chr6:23890969-23890980 chr6:23890971-23890982
24	CEBPB	chr6:23965097-23965486	Hela-S3	cervix:	n/a	chr6:23965289-23965300
25	CEBPB	chr6:23965067-23965484	MCF-7	breast:	n/a	chr6:23965289-23965300
26	CEBPB	chr6:24004427-24004735	MCF-7	breast:	n/a	n/a
27	CEBPB	chr6:23963411-23963772	MCF-7	breast:	n/a	n/a
28	CEBPB	chr6:23883401-23883634	A549	lung:	n/a	chr6:23883505-23883516
29	CEBPB	chr6:23954221-23954542	MCF-7	breast:	n/a	n/a
30	CEBPB	chr6:24017211-24017411	Hela-S3	cervix:	n/a	chr6:24017302-24017313 chr6:24017302-24017315 chr6:24017302-24017315
31	CEBPB	chr6:23879127-23879354	HepG2	liver:	n/a	chr6:23879241-23879252
32	CEBPB	chr6:23828813-23828974	H1-hESC	embryonic stem cell:	n/a	chr6:23828845-23828856
33	CEBPB	chr6:24020322-24020613	HepG2	liver:	n/a	n/a
34	CEBPB	chr6:23965108-23965481	HepG2	liver:	n/a	chr6:23965289-23965300
35	CEBPB	chr6:24017243-24017397	H1-hESC	embryonic stem cell:	n/a	chr6:24017302-24017313 chr6:24017302-24017315 chr6:24017302-24017315
36	CEBPB	chr6:23823738-23824090	HepG2	liver:	n/a	chr6:23823935-23823946 chr6:23823935-23823948
37	CEBPB	chr6:23965106-23965472	K562	blood:	n/a	chr6:23965289-23965300
38	CEBPB	chr6:23965108-23965478	IMR90	lung:	n/a	chr6:23965289-23965300
39	CEBPB	chr6:23890796-23891174	Hela-S3	cervix:	n/a	chr6:23890971-23890982 chr6:23890956-23890967 chr6:23890969-23890980 chr6:23890971-23890982
40	CEBPB	chr6:24046139-24046141	K562	blood:	n/a	n/a
41	CEBPB	chr6:23931161-23931449	H1-hESC	embryonic stem cell:	n/a	chr6:23931276-23931287 chr6:23931278-23931287 chr6:23931278-23931287 chr6:23931278-23931287 chr6:23931278-23931287
42	CEBPB	chr6:24017164-24017380	K562	blood:	n/a	chr6:24017302-24017313 chr6:24017302-24017315 chr6:24017302-24017315
43	CEBPB	chr6:23965111-23965481	H1-hESC	embryonic stem cell:	n/a	chr6:23965289-23965300
44	CEBPB	chr6:23965169-23965342	K562	blood:	n/a	chr6:23965289-23965300
45	CEBPB	chr6:23828713-23828984	A549	lung:	n/a	chr6:23828845-23828856
46	CEBPB	chr6:23883336-23883679	HepG2	liver:	n/a	chr6:23883505-23883516
47	CEBPB	chr6:24017137-24017485	IMR90	lung:	n/a	chr6:24017302-24017313 chr6:24017302-24017315 chr6:24017302-24017315
48	CEBPB	chr6:23867406-23867756	HepG2	liver:	n/a	chr6:23867541-23867552 chr6:23867585-23867596
49	CEBPB	chr6:23867437-23867691	A549	lung:	n/a	chr6:23867541-23867552 chr6:23867585-23867596
50	CEBPB	chr6:24014441-24014599	HepG2	liver:	n/a	chr6:24014519-24014530

(count:245 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:23854222-23854272	NB4	blood:	n/a
2	chr6:23854222-23854272	NB4	blood:	n/a
3	chr6:23955726-23955776	HCPEpiC	choroid plexus:	n/a
4	chr6:23854555-23854605	HL-60	blood:	n/a
5	chr6:23854555-23854605	HCT-116	colon:	n/a
6	chr6:23854222-23854272	HCM	heart:	n/a
7	chr6:23854555-23854605	HUVEC	blood vessel:	n/a
8	chr6:23955726-23955776	HIPEpiC	eye:	n/a
9	chr6:23854222-23854272	BJ	skin:	n/a
10	chr6:23854222-23854272	RPTEC	kidney:	n/a
11	chr6:23854494-23854544	ovcar-3	ovarian:	n/a
12	chr6:23854494-23854544	AG10803	skin:	n/a
13	chr6:23854494-23854544	GM12891	blood:	n/a
14	chr6:23854222-23854272	HPAEpiC	pulmonary alveolar:	n/a
15	chr6:23955726-23955776	A549	lung:	n/a
16	chr6:23854222-23854272	AG04450	lung:	fetal
17	chr6:23854555-23854605	AG04450	lung:	fetal
18	chr6:23854555-23854605	MCF10A-Er-Src	breast:	n/a
19	chr6:23955726-23955776	GM12878	blood:	n/a
20	chr6:23854494-23854544	RPTEC	kidney:	n/a
21	chr6:23854555-23854605	Hela-S3	cervix:	n/a
22	chr6:23854555-23854605	HPAEpiC	pulmonary alveolar:	n/a
23	chr6:23854222-23854272	ProgFib	skin:	n/a
24	chr6:23854494-23854544	SK-N-SH_RA	brain:	n/a
25	chr6:23854494-23854544	GM12892	blood:	n/a
26	chr6:23854222-23854272	U87	brain:	n/a
27	chr6:23854222-23854272	HRE	kidney:	n/a
28	chr6:23854555-23854605	AG10803	skin:	n/a
29	chr6:23854494-23854544	AG09309	skin:	n/a
30	chr6:23955726-23955776	Hepatocyte	liver:	n/a
31	chr6:23955726-23955776	HUVEC	blood vessel:	n/a
32	chr6:23854494-23854544	IMR90	lung:	fetal
33	chr6:23854494-23854544	U87	brain:	n/a
34	chr6:23854555-23854605	GM12891	blood:	n/a
35	chr6:23854494-23854544	HRCEpiC	kidney:	n/a
36	chr6:23854494-23854544	HCF	heart:	n/a
37	chr6:23854555-23854605	HAEpiC	amniotic membrane:	n/a
38	chr6:23955726-23955776	HNPCEpiC	eye:	n/a
39	chr6:23854494-23854544	ProgFib	skin:	n/a
40	chr6:23854494-23854544	HL-60	blood:	n/a
41	chr6:23854555-23854605	AG04449	skin:	fetal
42	chr6:23854555-23854605	BJ	skin:	n/a
43	chr6:23955726-23955776	NB4	blood:	n/a
44	chr6:23854222-23854272	GM06990	blood:	n/a
45	chr6:23854222-23854272	AG09319	gingival:	n/a
46	chr6:23955726-23955776	AG10803	skin:	n/a
47	chr6:23955726-23955776	AoSMC	blood vessel:	n/a
48	chr6:23854555-23854605	SKMC	muscle:	n/a
49	chr6:23854555-23854605	Jurkat	blood:	n/a
50	chr6:23955726-23955776	HL-60	blood:	n/a

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:23952885..23955459-chr6:23957501..23960494,2	K562	blood:
2	chr6:23976164..23979074-chr6:23981156..23983505,2	MCF-7	breast:
3	chr6:24018738..24020604-chr6:24023027..24024601,2	MCF-7	breast:
4	chr10:102117039..102117661-chr6:23910880..23911790,2	Hela-S3	cervix:
5	chr6:23981493..23983879-chr6:23990400..23992285,2	MCF-7	breast:
6	chr6:23951517..23954441-chr6:23956245..23958507,2	MCF-7	breast:
7	chr6:24026927..24029351-chr6:24029824..24032711,2	MCF-7	breast:
8	chr6:23933203..23935134-chr6:23935922..23937472,2	K562	blood:
9	chr6:23923563..23926014-chr6:23927623..23930582,2	MCF-7	breast:
10	chr6:24000256..24001903-chr6:24002572..24004759,2	K562	blood:
11	chr6:23933203..23935134-chr6:23935922..23937472,2	K562	blood:
12	chr6:23981454..23983185-chr6:24004329..24006458,2	MCF-7	breast:
13	chr6:24030615..24032560-chr6:24032617..24034709,2	MCF-7	breast:
14	chr6:23883681..23885208-chr6:23886637..23889627,2	MCF-7	breast:
15	chr6:23923563..23926014-chr6:23927623..23930582,2	MCF-7	breast:
16	chr6:23981454..23983185-chr6:24004329..24006458,2	MCF-7	breast:
17	chr6:24030615..24032560-chr6:24032617..24034709,2	MCF-7	breast:
18	chr6:24043320..24045960-chr6:24046416..24048846,2	MCF-7	breast:
19	chr6:24000256..24001903-chr6:24002572..24004759,2	K562	blood:
20	chr6:24018738..24020604-chr6:24023027..24024601,2	MCF-7	breast:
21	chr6:23918439..23920690-chr6:23924109..23926782,2	MCF-7	breast:
22	chr6:24064097..24064858-chr6:24204874..24205897,5	MCF-7	breast:
23	chr6:23879136..23881788-chr6:23889140..23891647,2	K562	blood:
24	chr6:23883681..23885208-chr6:23886637..23889627,2	MCF-7	breast:
25	chr6:24064474..24065410-chr6:24274945..24275686,3	MCF-7	breast:
26	chr6:23879136..23881788-chr6:23889140..23891647,2	K562	blood:
27	chr6:23951517..23954441-chr6:23956245..23958507,2	MCF-7	breast:
28	chr6:23952885..23955459-chr6:23957501..23960494,2	K562	blood:
29	chr6:24052796..24054479-chr6:24058448..24061278,2	MCF-7	breast:
30	chr6:24064087..24064968-chr6:24274253..24275166,4	MCF-7	breast:
31	chr6:24043320..24045960-chr6:24046416..24048846,2	MCF-7	breast:
32	chr6:24064018..24065690-chr6:24204899..24205799,9	MCF-7	breast:
33	chr6:24026927..24029351-chr6:24029824..24032711,2	MCF-7	breast:
34	chr6:23815806..23818064-chr6:23824088..23826782,2	MCF-7	breast:
35	chr17:57920621..57922223-chr6:23884700..23886484,2	MCF-7	breast:
36	chr6:24052796..24054479-chr6:24058448..24061278,2	MCF-7	breast:
37	chr6:23918439..23920690-chr6:23924109..23926782,2	MCF-7	breast:
38	chr6:23976164..23979074-chr6:23981156..23983505,2	MCF-7	breast:
39	chr6:23815806..23818064-chr6:23824088..23826782,2	MCF-7	breast:
40	chr6:23981493..23983879-chr6:23990400..23992285,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRSN1-4	chr6:24002052-24002658	NONHSAT108103

No data

Variant related genes	Relation type
HNRNPA1P58	TF binding region
SPTLC1P2	TF binding region
ENSG00000220748	TF binding region
HNRNPA1P58	CpG island
SPTLC1P2	CpG island
ENSG00000220748	CpG island
ENSG00000146038	chromatin interactions

Extended variants
information (count: 5900 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:5900 , 50 per page) page: 1 2 3 4 5 6 7 ... 118

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74659084	chr6:23823014-23823015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs532224629	chr6:23823017-23823018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs550743695	chr6:23823026-23823027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs562455019	chr6:23823034-23823035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs529765993	chr6:23823070-23823071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547890269	chr6:23823106-23823107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs566506176	chr6:23823111-23823112	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs118073471	chr6:23823132-23823133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs547364223	chr6:23823170-23823171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs377153456	chr6:23823174-23823175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs542455051	chr6:23823184-23823185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs538867475	chr6:23823226-23823227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs12195684	chr6:23823292-23823293	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs150329885	chr6:23823301-23823302	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs531363571	chr6:23823313-23823314	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs183203765	chr6:23823329-23823330	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs543368023	chr6:23823370-23823371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs536717926	chr6:23823372-23823373	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs554627811	chr6:23823380-23823381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs572930422	chr6:23823406-23823407	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs114800439	chr6:23823432-23823433	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs558466138	chr6:23823439-23823440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs117580691	chr6:23823476-23823477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs565158252	chr6:23823538-23823539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544081577	chr6:23823555-23823556	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs143112319	chr6:23823566-23823567	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs562667530	chr6:23823580-23823581	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs536142662	chr6:23823581-23823582	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541972478	chr6:23823650-23823651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs376468764	chr6:23823655-23823656	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs560284121	chr6:23823680-23823681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs527324860	chr6:23823695-23823696	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs552160555	chr6:23823696-23823697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs571971586	chr6:23823768-23823769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs137871746	chr6:23823784-23823785	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs532038225	chr6:23823799-23823800	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs115244866	chr6:23823804-23823805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs114352312	chr6:23823814-23823815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs80226601	chr6:23823819-23823820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs554693063	chr6:23823824-23823825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs77795310	chr6:23823829-23823830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs143400733	chr6:23823833-23823834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs80084582	chr6:23823856-23823857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs544527504	chr6:23823898-23823899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs556160071	chr6:23823903-23823904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs186419547	chr6:23823920-23823921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs542036044	chr6:23823935-23823936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs560298581	chr6:23823989-23823990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs16888194	chr6:23823992-23823993	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs545835667	chr6:23824003-23824004	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	16790693	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Lung cancer	19153074	CNVD
Breast cancer	21364760	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Williams-beuren syndrome	16971481	CNVD
Uveal melanoma	20484589	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
Glioma	20126413	CNVD

Chromatin state (count:288 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23823000-23823200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:23823000-23823200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:23823000-23823600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:23823000-23824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:23823000-23824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:23823200-23823800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:23823200-23824000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:23823800-23824000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:23823800-23824000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:23823800-23824200	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:23823800-23824200	Enhancers	HepG2	liver
12	chr6:23823800-23825000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:23824800-23825000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:23841000-23841600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:23850800-23852600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:23850800-23852600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:23852000-23852600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:23855600-23856000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:23856000-23856200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:23869000-23869200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:23869400-23870400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:23869800-23871200	Enhancers	Fetal Brain Male	brain
23	chr6:23870400-23877200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:23870600-23871000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr6:23870600-23871200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:23870600-23871200	Enhancers	Brain Germinal Matrix	brain
27	chr6:23870600-23871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:23870600-23872200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:23870800-23871200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:23871200-23872200	Weak transcription	Fetal Brain Male	brain
31	chr6:23871200-23873600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:23871200-23874600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:23871200-23874800	Weak transcription	Brain Germinal Matrix	brain
34	chr6:23871400-23874400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:23872200-23872600	Enhancers	Fetal Brain Male	brain
36	chr6:23872200-23872600	Active TSS	Fetal Lung	lung
37	chr6:23872200-23872600	ZNF genes & repeats	Pancreas	Pancrea
38	chr6:23872200-23873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:23873000-23874800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:23873000-23876400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:23873200-23873600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:23873600-23876200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:23873600-23881800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:23874000-23876000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:23874400-23876000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:23874600-23874800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr6:23874800-23875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:23874800-23875400	Enhancers	Brain Germinal Matrix	brain
49	chr6:23875200-23876200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:23875400-23876000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links