Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10456288	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196415	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12200386	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12215276	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35231344	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35908293	0.82[ASN][1000 genomes]
rs41387151	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72837350	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754258	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9348600	0.86[EUR][1000 genomes]
rs9348604	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9356899	0.86[EUR][1000 genomes]
rs9356901	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9356902	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366533	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9379577	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9379588	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9379589	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9379591	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9393477	0.86[EUR][1000 genomes]
rs9393479	0.86[EUR][1000 genomes]
rs9393483	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23823000-23823600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:23823000-23824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:23823000-23824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:23823200-23823800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:23823200-23824000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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