Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10456288	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12195684	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12196415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12200386	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213970	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12215276	0.83[ASN][1000 genomes]
rs35231344	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35908293	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41387151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72837350	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754258	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9348600	0.92[EUR][1000 genomes]
rs9348604	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9356899	0.93[EUR][1000 genomes]
rs9356901	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9356902	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9366533	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379588	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9379589	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9379590	0.89[EUR][1000 genomes]
rs9379591	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9393477	0.93[EUR][1000 genomes]
rs9393479	0.93[EUR][1000 genomes]
rs9393483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030174	chr6:23743412-23776497	Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755115	chr6:23743412-23790212	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1025078	chr6:23753085-23776497	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv527726	chr6:23762391-23775595	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv1022846	chr6:23765651-23776497	Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv432855	chr6:23765651-23790212	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23774600-23775600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:23775200-23775800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:23775400-23775600	Enhancers	Rectal Smooth Muscle	rectum

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