Variant report

Variant	rs9379590
Chromosome Location	chr6:23798024-23798025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10456288	0.92[EUR][1000 genomes]
rs12196415	0.93[EUR][1000 genomes]
rs12200386	0.90[EUR][1000 genomes]
rs35231344	0.84[EUR][1000 genomes]
rs35908293	0.84[EUR][1000 genomes]
rs41387151	0.92[EUR][1000 genomes]
rs72837350	0.92[EUR][1000 genomes]
rs7754258	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348600	0.91[EUR][1000 genomes]
rs9348604	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9356899	0.91[EUR][1000 genomes]
rs9356901	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9356902	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366533	0.88[EUR][1000 genomes]
rs9379577	0.89[EUR][1000 genomes]
rs9379588	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379589	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379591	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393477	0.91[EUR][1000 genomes]
rs9393479	0.91[EUR][1000 genomes]
rs9393483	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23798000-23798400	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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