Variant report
| Variant | rs9348600 |
|---|---|
| Chromosome Location | chr6:23794907-23794908 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10456288 | 0.99[EUR][1000 genomes] |
| rs12195684 | 0.86[EUR][1000 genomes] |
| rs12196415 | 0.97[EUR][1000 genomes] |
| rs12200386 | 0.97[EUR][1000 genomes] |
| rs12213970 | 0.83[EUR][1000 genomes] |
| rs12215276 | 0.80[EUR][1000 genomes] |
| rs35231344 | 0.90[EUR][1000 genomes] |
| rs35908293 | 0.87[EUR][1000 genomes] |
| rs41387151 | 0.99[EUR][1000 genomes] |
| rs72837350 | 0.99[EUR][1000 genomes] |
| rs7754258 | 0.97[EUR][1000 genomes] |
| rs9348604 | 0.97[EUR][1000 genomes] |
| rs9356899 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9356901 | 0.99[EUR][1000 genomes] |
| rs9356902 | 0.99[EUR][1000 genomes] |
| rs9366533 | 0.94[EUR][1000 genomes] |
| rs9379577 | 0.92[EUR][1000 genomes] |
| rs9379588 | 0.99[EUR][1000 genomes] |
| rs9379589 | 0.99[EUR][1000 genomes] |
| rs9379590 | 0.91[EUR][1000 genomes] |
| rs9379591 | 0.99[EUR][1000 genomes] |
| rs9393477 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9393479 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9393483 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:23794000-23795000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
