Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10456288	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12196415	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12200386	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35908293	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41387151	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72837350	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7754258	0.86[EUR][1000 genomes]
rs9348600	0.83[EUR][1000 genomes]
rs9348604	0.83[EUR][1000 genomes]
rs9356899	0.84[EUR][1000 genomes]
rs9356901	0.84[EUR][1000 genomes]
rs9356902	0.84[EUR][1000 genomes]
rs9366533	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9379577	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9379588	0.84[EUR][1000 genomes]
rs9379589	0.84[EUR][1000 genomes]
rs9379591	0.84[EUR][1000 genomes]
rs9393477	0.84[EUR][1000 genomes]
rs9393479	0.84[EUR][1000 genomes]
rs9393483	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893660	chr9:105942389-106068965	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893661	chr9:105942389-106076270	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv893662	chr9:105947343-106068965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv825022	chr9:105999365-106004232	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:106000200-106004000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:106000200-106004200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:106000200-106004400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:106000200-106007400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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