Variant report

Variant	rs10456288
Chromosome Location	chr6:23797634-23797635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12195684	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196415	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12200386	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12213970	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12215276	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35231344	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35908293	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41387151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66591286	0.83[AMR][1000 genomes]
rs72837350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7754258	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9348600	0.99[EUR][1000 genomes]
rs9348604	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9356899	0.99[EUR][1000 genomes]
rs9356901	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9356902	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9366533	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379577	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379588	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9379589	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9379590	0.92[EUR][1000 genomes]
rs9379591	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9393477	0.99[EUR][1000 genomes]
rs9393479	0.99[EUR][1000 genomes]
rs9393483	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23796000-23797800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:23796600-23797800	Enhancers	Brain Germinal Matrix	brain
3	chr6:23797200-23797800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:23797400-23797800	Enhancers	Cortex derived primary cultured neurospheres	brain

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