Variant report
| Variant | rs66591286 |
|---|---|
| Chromosome Location | chr6:23748713-23748714 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224738 | Chromatin interaction |
| ENSG00000108395 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10456288 | 0.83[AMR][1000 genomes] |
| rs12200386 | 0.87[AMR][1000 genomes] |
| rs34322312 | 0.84[ASN][1000 genomes] |
| rs35148131 | 0.84[ASN][1000 genomes] |
| rs41387151 | 0.83[AMR][1000 genomes] |
| rs6456570 | 0.86[ASN][1000 genomes] |
| rs6930955 | 0.90[ASN][1000 genomes] |
| rs9366533 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1027773 | chr6:23644898-23776497 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1030174 | chr6:23743412-23776497 | Enhancers Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv2755115 | chr6:23743412-23790212 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv601139 | chr6:23743702-23750963 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
